Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0917 ATGTACAGAAGGCTTCGAAGGTTTGAGACTGGTGTCACATCAGAGGCATCAAACAAAACAAGAGCAGCTAAAGTTTCTGGATGTGGAAGAGATAAAAAAGAAACAACAGGCAAAGATATTTTGAGCAAACTGAGGAAAGTAGATTTGACAGATCAAGAATGGGTCAATAAGATTCCAGAGTGTCCAGTGTTCTACCCATCAGAACAGGAGTTTGAGGATCCTTTAGTTTATCTGCAGAAGATTTTGCCTGAGGCACACAAATATGGAATGTGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGCTGTTATGTCAATGAAAGAGATAGAAAAGTTCAAGTTTGAAACCATTGTACAACCTCTTCAGTTTCCTGAATGGAAAGAGGACAATGAAACAATCTATTCTCTCAGAGGCAGTTCACGAAGTCTTCCTTCTTCATATGTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGATCAGATGGTAACAGTTGAGTATGGACGTGTTTGCATGGCATGTAGCAGCGTGTTTGCATGGCATGTGGAAGATCACTATTTGTACAGCATTAACTACCATCACTCAGGAGCATATAAAACTTGGTATGGGTTTCCCATCTATGCAACGTCTCGATTCGAAGAGGTTTCCTTAGAACATGTGTTCCATAATAAGATTTTATCATCAAAACATGATGGAGAGGCTGGTGCCTTCCAAGCTCTTGCTCATAAAACAACCATGTTTACTCCAAATGTCTTGCTCCAACATGGTGTGCCAGTTTAA 786 0.402 MYRRLRRFETGVTSEASNKTRAAKVSGCGRDKKETTGKDILSKLRKVDLTDQEWVNKIPECPVFYPSEQEFEDPLVYLQKILPEAHKYGMCKIVSPLNASIPAAVMSMKEIEKFKFETIVQPLQFPEWKEDNETIYSLRGSSRSLPSSYVEKLFWHEMEHGDQMVTVEYGRVCMACSSVFAWHVEDHYLYSINYHHSGAYKTWYGFPIYATSRFEEVSLEHVFHNKILSSKHDGEAGAFQALAHKTTMFTPNVLLQHGVPV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0917 261 Gene3D Cupin 49 168 - -
Lele32g0917 261 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
Lele32g0917 261 Pfam jmjN domain 62 94 IPR003349 -
Lele32g0917 261 PANTHER LYSINE-SPECIFIC DEMETHYLASE 176 261 - -
Lele32g0917 261 Gene3D Cupin 169 261 - -
Lele32g0917 261 SUPERFAMILY Clavaminate synthase-like 130 224 - -
Lele32g0917 261 SMART JmjN_1 60 101 IPR003349 -
Lele32g0917 261 Pfam JmjC domain, hydroxylase 175 261 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0917 Lele-ChrLele32 6171548 6172748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0917 54 97 C2H2 Transcription Factor Family AT5G04240 47.727 1.91e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele32g0917 JmjC 2.8e-15 CL0029