Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0875 ATGGCTGCGATTGCTGAGATTTCCGTCGACGCAGTAGCTGCTAACAAGTTGGACTCAAATTCCAAGTCCGAATCCGAATTCAATGTCCAAAAACTCGTCGATATGTTCACTAAGTTGAATCCTTTGGCGAAAGAGTTTTTCCCTTCGAGTTATTCTCATCATGATCATCTCTATCAGGGCTATCATCAGCTCCCACCGAACAATTTTCTGGGCAGCAATAATATGGCCGCTGATGGTAATAACCCAAATAATCGAACGAGAAGAACTAATTATGGCCAGGGGAGGAGAAAGTCCAATGGAAGAGTGCATAAGGCTCAGAGAGATGATAGCATTAGAAGAACAGTATATGTTTCTGACATAGATCAGCATGTTACTGAGGAGCAGCTTGCTGCCTTATTTACCAGTTGTGGACAAGTTGTTGACTGCCGAATTTGCGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCAAGGTGCTAGAGCAGCTTTAAATCTTGGTGGCACTGTTCTTGGATACTATCCCGTTAGGGTCCTTCCGTCCAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCTGAGGATGAGAGGGAAATGTGTAGCAGGACTGTCTATTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAACTTTTTTGAAACAGCTTGTGGTGAGGTTACCCGCTTGAGGCTTTTAGGAGATCATGCTCATTCAACTCGAATAGCTTTTGTAGAATTTGCAATGGCAGAAAGTGCCATTATTGCTCTAAGTTGTAGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGAATGGCCCATCCAACACCCCATTAA 897 0.437 MAAIAEISVDAVAANKLDSNSKSESEFNVQKLVDMFTKLNPLAKEFFPSSYSHHDHLYQGYHQLPPNNFLGSNNMAADGNNPNNRTRRTNYGQGRRKSNGRVHKAQRDDSIRRTVYVSDIDQHVTEEQLAALFTSCGQVVDCRICGDPHSILRFAFVEFADEQGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHAHSTRIAFVEFAMAESAIIALSCSGMPLGSQPIRVSPSKTPVRPRMAHPTPH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0875 298 MobiDBLite consensus disorder prediction 70 107 - -
Lele32g0875 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Lele32g0875 298 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Lele32g0875 298 SUPERFAMILY RNA-binding domain, RBD 76 189 IPR035979 GO:0003676
Lele32g0875 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Lele32g0875 298 FunFam Polyadenylate-binding protein-interacting protein 11 78 190 - -
Lele32g0875 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Lele32g0875 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Lele32g0875 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Lele32g0875 298 CDD RRM2_CID8_like 206 287 IPR034825 -
Lele32g0875 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 291 - -
Lele32g0875 298 MobiDBLite consensus disorder prediction 278 298 - -
Lele32g0875 298 SUPERFAMILY RNA-binding domain, RBD 200 292 IPR035979 GO:0003676
Lele32g0875 298 MobiDBLite consensus disorder prediction 70 89 - -
Lele32g0875 298 Gene3D - 198 292 IPR012677 -
Lele32g0875 298 Gene3D - 72 189 IPR012677 -
Lele32g0875 298 FunFam Polyadenylate-binding protein-interacting protein 10 204 282 - -
Lele32g0875 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Lele32g0875 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0875 Lele-ChrLele32 5830682 5836134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0875 101 267 Eukaryotic Initiation Factors Gene Family AT1G34140 25.862 9.93e-13 66.2