Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0845 ATGCAAGCAGCATCAATGGCAAGCTCTCACTATGGAAAACCCCTTGATTTGGTGGTTTCACTACGTTCTTCAAGAACTATTAACTCACATCTCGCATCGTTACCCTCACCCAACAGTTCTTCCATTCAATTCACACTACAACGCAAATTTCACCCACAACCACTATTATTAAACCAATCTATTATTGGTGTTCCGCTCACTACCAATCTAGTTACATTACCGAAAATCTCCAAAACTTCTAGGTTAAGCTATTTCTCTCCTCTTCGTTGCGGCGTTTCATCGAGTGGGGATAGCGCAAATGGTGGCAGGAGCTTTCGGGATTGGGTGGAGCTTGTAGGAGAGGTCCTTTCCACGGCATTTCCTTTATGGGTTGCAATTGGGTGCTTGCTGGGGTTAGTCAAACCTAGTTCCTTTGACTGGGTCACGCCCAAACTGAGCATTCTTGGTCTAACCACGATTATGCTTGGCATGGGAATGACGCTTACTCTTGATGATCTTCGTGGAGCTCTTGCTATGCCTAAGGAAGTACTCGCAGGTTTCGTGCTTCAGTACTCGGTTATGCCATTATCTGGATTTTTTGTAAGCAAACTCTTAAATCTGCCATCGCATTTTGCAGCTGGTTTAATATTGGTTGGGTGCTGCCCTGGTGGTACGGCTAGCAACATTGTTACTTATCTTGCACGAGCCAATGTGGCGCTTTCTGTGTTAATGACAGCTGCAAGCACTTTTGCCTCCGTGGTTATGACTCCTTTTCTGACAGCAAAACTAGCTGGTAAATATGTAGCTGTGAATGCAGCTGACTTGCTGGTATCAACTTTGCAGGTTGTGCTCCTACCTGTTCTGGCTGGTGCTTTTTTGAATCAGTTTCTCCAACCTATTGTGAAAATTTTCAACCCATTGATGCCACCTGTTGCTGTAGTAACCGTTGCAATTTTATGTGGACGTGCCATTGCCCAGAGTTCTTCAGCAATCCTCATGTCTGGAGGACTAGTAATTCTAGCTTGCTGTCTTCTTCATGCTTCTGGGTTTTTCTTCGGTTACATACTTGCAAGGATGTTGGGGATAGACGTGTCTTCATCACGAACAATTTCCATTGAGGTTGGCATGCAGAACTCGGTGCTTGGAGTTGTGTTGGCTACAAAGCATTTTGGGGATCCGCTGACAACAGTACCATGTGCAGTTTCCAGTGTGATTCATTCAATCTTCGGAAGCGCATTGGCTGGAATTTGGAGACGCTCTGAAATTGAGAGAAGCAATGCTAACTTTGATGGTGGAGAGAACAACCAGTTTTGTGCTATCTTACATGGAAAGTCTTCCTGTCACACCCTACGGCTACAAACAAACCCAGAAACCTTACAAAGAATGGATCCCAATTATCATGGCTTACCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACTAGAGCTCCAGAATCAACAGCGACATCACAATCACAAAACTCAGGATGAAGGCGCCGTCGTTTCCTGCTCAACTTTACCGGCAAAGAAGCGTAAGGAATCTCGAGATTCAACATTTCTTTCCGATTCGCCAGCTTCAGTTTCTGTCAGCGCTTATTCGTTACCAGCTAAGAAACGGGTATGGGCCCTTCAACCTGATTTTGCTTCCTATGTCGGTGTTTCTTCTATTGATCTCAATGTTGAATACAAACCATCGATTGAGGAAGAAGCAAAATTAGTAGATGATGAACCCACTGAAACTGAGATTCCACTTGTAGCTAATTCCCTTGATGTTGAAAATGAAACTGAAAATATTGAAGATGTTGATGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACAGATGGGGATCCATCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCGTCATGCTATGGCAATCCACTTGTAAAGGGAATACCAGAAGGTGATTGGTTCTGTGAAAAATGCAGGTTTTCATCGTCTTCTCAAACTAAGAATGATGATGTAAGCAACATTTCTTGTTGCCTCTGTCCTACAAAGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCTCATGTTGTGTGTGCGCTTTTAGTCCCTGAGGTGTTTTTTAAGGACCCAGAAGGAAGAGAAGGGATTGATTACTCAAAGGTTCCCAAAAAGAGGTGGTCTGAGAAGTGCTATATTTGTGATTCTTCAAATGGATGTGCAATTGTGTGTTCTGAGCTTAAGTGTCCTTTGGCATTTCATGTCACTTGTGGATTGAAAGAGGATCTTACCATTGAGTATCGTGAAGGGAAGAAGAATGCTACCATTGTTGCTGGTTTCTGCAAAAGCCACACTGAATTATGGAAAAAGCAACAGCTCTCTGGAAAATACAGAATCGTAGCTGAAGAAAACAAGTAA 2391 0.4371 MQAASMASSHYGKPLDLVVSLRSSRTINSHLASLPSPNSSSIQFTLQRKFHPQPLLLNQSIIGVPLTTNLVTLPKISKTSRLSYFSPLRCGVSSSGDSANGGRSFRDWVELVGEVLSTAFPLWVAIGCLLGLVKPSSFDWVTPKLSILGLTTIMLGMGMTLTLDDLRGALAMPKEVLAGFVLQYSVMPLSGFFVSKLLNLPSHFAAGLILVGCCPGGTASNIVTYLARANVALSVLMTAASTFASVVMTPFLTAKLAGKYVAVNAADLLVSTLQVVLLPVLAGAFLNQFLQPIVKIFNPLMPPVAVVTVAILCGRAIAQSSSAILMSGGLVILACCLLHASGFFFGYILARMLGIDVSSSRTISIEVGMQNSVLGVVLATKHFGDPLTTVPCAVSSVIHSIFGSALAGIWRRSEIERSNANFDGGENNQFCAILHGKSSCHTLRLQTNPETLQRMDPNYHGLPPLKRFRLIQQQLELQNQQRHHNHKTQDEGAVVSCSTLPAKKRKESRDSTFLSDSPASVSVSAYSLPAKKRVWALQPDFASYVGVSSIDLNVEYKPSIEEEAKLVDDEPTETEIPLVANSLDVENETENIEDVDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCRFSSSSQTKNDDVSNISCCLCPTKEGAMKPTVDERWAHVVCALLVPEVFFKDPEGREGIDYSKVPKKRWSEKCYICDSSNGCAIVCSELKCPLAFHVTCGLKEDLTIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEENK 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0845 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 778 IPR013083 -
Lele32g0845 796 Pfam PHD-zinc-finger like domain 666 775 - -
Lele32g0845 796 CDD PHD_BRPF_JADE_like 601 649 - -
Lele32g0845 796 SUPERFAMILY FYVE/PHD zinc finger 588 653 IPR011011 -
Lele32g0845 796 CDD ePHD 667 775 - -
Lele32g0845 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 663 IPR013083 -
Lele32g0845 796 ProSiteProfiles Zinc finger PHD-type profile. 599 652 IPR019787 -
Lele32g0845 796 SMART PHD_3 601 650 IPR001965 -
Lele32g0845 796 SMART PHD_3 721 776 IPR001965 -
Lele32g0845 796 Gene3D - 105 413 IPR038770 -
Lele32g0845 796 Pfam Sodium Bile acid symporter family 148 321 IPR002657 GO:0016020
Lele32g0845 796 Pfam PHD-finger 601 651 IPR019787 -
Lele32g0845 796 ProSiteProfiles Extended PHD (ePHD) domain profile. 664 776 IPR034732 -
Lele32g0845 796 PANTHER SODIUM-BILE ACID COTRANSPORTER 103 417 IPR004710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0845 Lele-ChrLele32 5616239 5623810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0845 72 413 Organic Solute Cotransporters AT1G78560 72.222 9.39e-173 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele32g0845 SBF 2.8e-36 CL0064