Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0832 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTATGCTGCGCGGACGAGGCGGCGCTATGTCGGCAATGTGACGAGAAGGTTCATGCAGCTAACAAGCTGGCTACCAAGCATCAGAGGGTTCCTCTATCTACCTCTTCCTCTCAGATGCCTACATGTGATATTTGTCAGGAAGCTGTTGGCTATTTCTTCTGTCTGGAGGACCGAGCCTTACTATGCAGAAAATGCGATGTGGCAATACACACAGCAAATTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTAGGACTTGAAGCTACTGAGCCTGTTGCTCCATCGTCCTCTGTGAAGTCAGATTCTGAGGAGAAAGTGTCAGATACAGTATCCACTTCTGTCTCCAAGAAGGTTCCTTCAACGGCTCAGCCATCTGAATACGATGAATTGTTACCTACTCAAGCTGGAGGAATTGAGGAGTTTCAGCCAACCAAAGTTTCTTATGGTGGTGGTTCTACTAACTGGCCGCTTGATGAATTTTTTGGTTTCAATGAATTCAGTCATAATTTCAATTTTATGGACAATGTCAATGGACCATCCAAGGCTGAGAGCAGTAAGCTCGGGGATTCTGATTCTTCTGTTTTGAGATCTAGTGAAGAGGAAATGGATTACGATGATTACTTGGGGCGTGTTCCGGATTCGTCTTGGACAGTTCCTCAGATCCCTTCCCCTCCTACGGCTTCGGGCTTATATTGGCCGAAAGGTCCTCGATATTCATCTGCTAATAATGCTATGTTTGTTCCTGACATATGCTCTCCTCACATCCAACAGCCTCTTCGTGCTCAGAGAAATAGTACATTATCAAAGGGGCGAAGGTGA 879 0.4653 MKIQCNVCEAAEAEVLCCADEAALCRQCDEKVHAANKLATKHQRVPLSTSSSQMPTCDICQEAVGYFFCLEDRALLCRKCDVAIHTANSYVSAHQRFLLTGVRVGLEATEPVAPSSSVKSDSEEKVSDTVSTSVSKKVPSTAQPSEYDELLPTQAGGIEEFQPTKVSYGGGSTNWPLDEFFGFNEFSHNFNFMDNVNGPSKAESSKLGDSDSSVLRSSEEEMDYDDYLGRVPDSSWTVPQIPSPPTASGLYWPKGPRYSSANNAMFVPDICSPHIQQPLRAQRNSTLSKGRR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0832 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 - -
Lele32g0832 292 FunFam B-box zinc finger protein 22 1 93 - -
Lele32g0832 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele32g0832 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele32g0832 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele32g0832 292 CDD Bbox1_BBX-like 57 99 - -
Lele32g0832 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele32g0832 292 CDD Bbox1_BBX-like 5 47 - -
Lele32g0832 292 MobiDBLite consensus disorder prediction 110 145 - -
Lele32g0832 292 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Lele32g0832 292 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Lele32g0832 292 Gene3D Classic Zinc Finger 1 93 - -
Lele32g0832 292 MobiDBLite consensus disorder prediction 127 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0832 Lele-ChrLele32 5526433 5528971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0832 1 272 C2C2-CO-like Transcription Factor Family AT1G78600 45.253 7.55e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele32g0832 zf-B_box 6.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0851 29 5767520 5770056 Lele32g0832 32 5526433 5528971 hybridization
Lele30g0546 30 10308970 10311612 Lele32g0832 32 5526433 5528971 hybridization