Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0812 ATGTCTCTGAGAAGCATTTTTCGTTCTCGGAAATTCTGTAGATCCTTCAAGGAGGTTAGGGCCATCGAGGAAGATGAGGGGAAGGGGCGGCTTTGCTGTGATTCCGACGGCCGTGGTGGCTCCATGGAGTCCCCGCCTTACGGCCGTTCATGGGCCACTATGCTGCCGGAACTTCTTGGGGAGATCATTAGCCGTGTTGACGCCACCGAGGACCAGTGGCCCAACCGCCGAAACGTCGTTGCTTGCGCTGGCGTGTGCAAGAGGTGGAGGGATATGACTAAGGAGATCGTGCGGTTACCTTCGTGCGACAGCGGCAGAATTACTTTTCCTTCTTGCCTTAAGAAGCCAGGACCACGTGACCCACCCCATCAATGTATTATAAAGAGGAATAAAAAGACCTCGACATTTCACCTATATCTTGCCTTTACTCCACCATCATTCACAGATAAAGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTTCTGGTATTGAATATGTACTTTCACTCGACGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGTTCAGATTTTCTTGGCACCAACTTCACAATCTATGATAGTCAGCCACCCCATTGTGGTGCAAGGCCATCAAATGTCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAACCCTCAAGTTCCTGCCGGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTAATGAAGTTCCCAAACCAATCATCGGGAGAAAGTTCAGATAGCAGATCTCTGGATGTTCACAAGACTAACAATACAGAACAAGCTGCATCGGAATACTCAATCTTGAAAAACAAATCTCCGAGGTGGCATGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTGACGGTAGCATCAGTGAAGAACTTTCAGCTTGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCAATTTGGGAAAGTAGGGGACGATACTTTCACTATGGATTACAGGAAGCCCCTATCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAGCTGGCTTGTGAGTAA 1146 0.4782 MSLRSIFRSRKFCRSFKEVRAIEEDEGKGRLCCDSDGRGGSMESPPYGRSWATMLPELLGEIISRVDATEDQWPNRRNVVACAGVCKRWRDMTKEIVRLPSCDSGRITFPSCLKKPGPRDPPHQCIIKRNKKTSTFHLYLAFTPPSFTDKGKFLLAAKRYRRGSGIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNVKASRRFASKQINPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCLMKFPNQSSGESSDSRSLDVHKTNNTEQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0812 381 Gene3D Tubby Protein; Chain A 108 381 IPR025659 -
Lele32g0812 381 MobiDBLite consensus disorder prediction 261 287 - -
Lele32g0812 381 PANTHER TUBBY-RELATED 48 379 - -
Lele32g0812 381 PRINTS Tubby superfamily signature 338 357 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 359 381 IPR000007 -
Lele32g0812 381 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Lele32g0812 381 SUPERFAMILY Tubby C-terminal domain-like 104 381 IPR025659 -
Lele32g0812 381 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Lele32g0812 381 Pfam F-box domain 56 98 IPR001810 GO:0005515
Lele32g0812 381 ProSitePatterns Tub family signature 2. 366 381 IPR018066 -
Lele32g0812 381 Pfam Tub family 113 376 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0812 Lele-ChrLele32 5389013 5392095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0812 50 381 TUB Transcription Factor Family AT1G53320 75.516 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele32g0812 Tub 2.2e-99 CL0395