Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0796 ATGTCGCATCCTGGGAAGCCCATTTCCGAGCTAGGAGTCGATGCTCTCAACGACCGATTTCATGACACCTTGAGCTGTGAAGCTAATAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCCGTTTCGCCATTGCTGACTCGTCACAGTGTACCTACTACCAGTGCCAGTGGACTCACTACTACCAGTAGTAGTTCGAGTTCATCTGGATCGGTCTCTGGACGAAACGGGTACAAACCGGTACCGAAACGATCCGATTACGATCCGAATTACCACTCCGGCGAGCTCTCCGGCTCCGGTGAGAACAGTCCGACCGTTGCAGGGAATGCCAGGAACTTCAAATCTCCTCAGGCTAGATCAGATTCCAAGACCACCCAACCGTTAATTTACTCCGGTCAAAGCTCCTCCGTGAATTCACCGCCGCCGAATTTTCTCCCCACAGGCAATATCTGTCCATCTGGCAAGGTTCTGAAGACGGCCGCCGCGGTCAGCCGGAGCTCCAGGACGGACGTTTTGGGTTATGGGATAGGAAATTACGGCCATGGAAGCATAATGCGGGGCGGTTGTGCGGCCAATGCGAGGTCGAGCAGTGGTGGTGCCATTACAGACTCAGTGAAGCGAGCGGTGATGAGTGTGGATCCAGAAGAGTTGAAGAGAACAGGGAACGAGCAGTACAAGAGGGGTCATTTCGCAGAGGCTCTGAGTCTATACGATCGAGCAATTTCATTATCCCCTGCTAACGCAGCCTATCGGAGCAACCGTGCAGCCGCATTGACGGGTTTGGGACGGTTGGCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTAGATCCCAATTATGGGAGGGCACATCAGCGTTTGGCTTCTCTTTTTCTACGGTTAGGGCAGCTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGTCACCTGAGCCTTTTGAGTTGCAGAAATTGCAATTAGTAGAGAAGCATATTGGGAAATGTACAGATTCCCGGAAGACAGGTGATTGGAAAAGTGTGCTCAGGGAAATTAATGCTGCCATTTCTTCTGGAGTAGACTCTTGTCCTGAGCTCTTTATGTGTGGAGCAGAGGCCCTTTTGAAACTCCACCAAGTTGATGATGCTGAATCAACTCTATTAAACAATCCCAAATTAGAACCACCTACTAACTCCTCTTCACAGGCAAGATTTTTTGGGATCCTTTCTGAAGCTTATTTCTTCTTTGTGAGAGCTCAGATTGAGATGGCTCTGGGAAGGTTTGAGAACGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGAAACATTGAAGTTACTGTTTTGCTAAAAAATGTAAGGATGGTGGCAAGAGCTCGAGCGCATGGCAATGATCTTTTCAAAACTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACATTCAATTGAGGATTGCAATCAAGCTTTACATTTCCAACCTAATTACACGAAAGCTCTTCTTCGTAGGGCTGCATCTAATAGCAAGTTAGAAAGGTGGGCGGAAGCGGTCAAAGATTATGAGATCCTGCGGAGGGATCTTCCGGATGACAGTGAAGTAGCTGAAGCTCTGTTTCATGCAGTAGTGGCATTAAAGAAATCTCGTGGCGAGGAAGTGCATGATTTGAAATTTGGTGGTGAGGTGGAAGAAGTATCAGGTCTTGAGCAATTTAGAGCAGCAATAGCATTACCAGGTGTTTCTGTGGTCCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATCTCACCATTTGTGGGTATGTTATGCGGCCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAAGAATGCCCAACAGTTGCGACGGCTGAGAGCATTAGAATTGTACCGACGTTCAAGATCTACAAGAATGGCTATTGTGTGAAGGAAATTGTGTGTCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2061 0.4823 MSHPGKPISELGVDALNDRFHDTLSCEANKPDFRELDLGSPVSPLLTRHSVPTTSASGLTTTSSSSSSSGSVSGRNGYKPVPKRSDYDPNYHSGELSGSGENSPTVAGNARNFKSPQARSDSKTTQPLIYSGQSSSVNSPPPNFLPTGNICPSGKVLKTAAAVSRSSRTDVLGYGIGNYGHGSIMRGGCAANARSSSGGAITDSVKRAVMSVDPEELKRTGNEQYKRGHFAEALSLYDRAISLSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQLENARKHLFCPGLSPEPFELQKLQLVEKHIGKCTDSRKTGDWKSVLREINAAISSGVDSCPELFMCGAEALLKLHQVDDAESTLLNNPKLEPPTNSSSQARFFGILSEAYFFFVRAQIEMALGRFENAVTAAEKAGQIDPRNIEVTVLLKNVRMVARARAHGNDLFKTERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEHSIEDCNQALHFQPNYTKALLRRAASNSKLERWAEAVKDYEILRRDLPDDSEVAEALFHAVVALKKSRGEEVHDLKFGGEVEEVSGLEQFRAAIALPGVSVVHFEIASNPQCKQISPFVGMLCGRYPSINFLKVDIQECPTVATAESIRIVPTFKIYKNGYCVKEIVCPSRDMLEHSVRHYSF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0796 686 Pfam Thioredoxin 592 675 IPR013766 -
Lele32g0796 686 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Lele32g0796 686 MobiDBLite consensus disorder prediction 95 142 - -
Lele32g0796 686 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 683 IPR044534 -
Lele32g0796 686 MobiDBLite consensus disorder prediction 46 75 - -
Lele32g0796 686 SUPERFAMILY TPR-like 214 442 IPR011990 GO:0005515
Lele32g0796 686 MobiDBLite consensus disorder prediction 28 142 - -
Lele32g0796 686 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
Lele32g0796 686 FunFam TPR repeat-containing thioredoxin TTL4 578 685 - -
Lele32g0796 686 SUPERFAMILY Thioredoxin-like 489 684 IPR036249 -
Lele32g0796 686 Pfam Tetratricopeptide repeat 221 280 - -
Lele32g0796 686 Gene3D Tetratricopeptide repeat domain 212 570 IPR011990 GO:0005515
Lele32g0796 686 SMART tpr_5 406 439 IPR019734 GO:0005515
Lele32g0796 686 SMART tpr_5 455 485 IPR019734 GO:0005515
Lele32g0796 686 SMART tpr_5 486 519 IPR019734 GO:0005515
Lele32g0796 686 SMART tpr_5 248 281 IPR019734 GO:0005515
Lele32g0796 686 SMART tpr_5 214 247 IPR019734 GO:0005515
Lele32g0796 686 SMART tpr_5 520 553 IPR019734 GO:0005515
Lele32g0796 686 CDD TRX_family 591 678 - -
Lele32g0796 686 Pfam Tetratricopeptide repeat 409 438 IPR019734 GO:0005515
Lele32g0796 686 Gene3D Glutaredoxin 571 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0796 Lele-ChrLele32 5277579 5280719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0796 451 596 U-box Gene Family AT3G07370 28.415 3.86e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0816 29 5409561 5412745 Lele32g0796 32 5277579 5280719 hybridization
Lele30g0581 30 10582879 10586014 Lele32g0796 32 5277579 5280719 hybridization