Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0792 ATGGATCCTACCAAGAAGCGAAAGCTTGATGATAATGGCGTCGTCCCATCCGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGCAAAATCGTTGAGCGTTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAAGAAGCCGTCGTCCGCCACGCTGACGTCCTCGACGCCGTGCGGTCTATTGCTGACCCTGATGTCACACAGCGTAAGCTTTTTATTCGCGGTCTTGGATGGGAGACAACCACTGACGGCCTCCGCTCCCTGTTTTCCACCTATGGTGAGCTTGAAGAAGCCATTGTGATTCTTGATAAGGCCACCGGCAAGTCTAAGGGTTATGGGTTTGTTACCTTTAAGCACGTCGATGGCGCTCTGCTTGCTCTGAAAGAACCCAGCAAGAGGATAGATGGTCGCGTTACTGTGACTCAGCTTGCAGCAGCTGGGAATACGGGATCCAATACTAATGCTGCGGATATTGCTATGCGGAAGATATATGTTGCGAATGTGCCGTCTGATCTACCGGCTGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCACTTTTTGTCTACAAGACGCCAGATGGCGCACAAGCGGCACTTGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAGCTGAATTGCAAGTTAGCCATAACCGATGGTAAGCAAGGGAAGCGAGGTGGTACGGGGCCAATGGGACCTGATGGAATTCAAGGTCCAGGGAATGCTCATGGTGATGCCATGGGTTTGGCTCCACCATCTTCCATGCCAGGGTCGCTTTCTGGTCAGTACGGTGGCCCTGTCGGCATGGGATCATATGGGGGTTTTGGGAGTGGGCTTCCTGGTCAGCCTCCCGTGGGGAATCATCCTCTGAACCCATCTGTGGGTGTCACGGGTTTGTCTTCGGCAGGTAATCCGCCGCCCTCTTCTCTGGGAGGTACTGGCGGGTATAGTTCTGGGCTAGGCGGTCCTTATGGTGGCTACGGTGGGCCTGGTTCTACTGGTTATGGTGCATTGGGGGGCGGCGGCAATGCGAGTCTGGGTGGAGGTAGTGGTGGGTTGGGTGCTGGTGGACTTGGTGGTTCTGGTGGTGGATTGGGGGTTTCTGGTTCTTTGTATAGATTGCCAACTTCAGTAGGAATGCCAACCGGTGGCTACCAAGATAGTGGACCTTATGGTTTATCGTCCGGGTATCCAAATCAACATCATCAACCTACCGGAGCCTCCCCTGTACCTAGAGTTCCACCTGGTGCTATGTATCCGAATGTGCCTCCTTACTACTGA 1341 0.5339 MDPTKKRKLDDNGVVPSDSDLNLTPSDARKIVERFSPEQLIDVLQEAVVRHADVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSTYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPDGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGTGPMGPDGIQGPGNAHGDAMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPVGNHPLNPSVGVTGLSSAGNPPPSSLGGTGGYSSGLGGPYGGYGGPGSTGYGALGGGGNASLGGGSGGLGAGGLGGSGGGLGVSGSLYRLPTSVGMPTGGYQDSGPYGLSSGYPNQHHQPTGASPVPRVPPGAMYPNVPPYY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0792 446 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Lele32g0792 446 CDD RRM_RBM24_RBM38_like 161 236 - -
Lele32g0792 446 MobiDBLite consensus disorder prediction 401 446 - -
Lele32g0792 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Lele32g0792 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Lele32g0792 446 MobiDBLite consensus disorder prediction 239 264 - -
Lele32g0792 446 SUPERFAMILY RNA-binding domain, RBD 155 262 IPR035979 GO:0003676
Lele32g0792 446 Gene3D - 51 152 IPR012677 -
Lele32g0792 446 MobiDBLite consensus disorder prediction 1 20 - -
Lele32g0792 446 Gene3D - 153 269 IPR012677 -
Lele32g0792 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Lele32g0792 446 PANTHER GEO13361P1-RELATED 52 358 - -
Lele32g0792 446 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Lele32g0792 446 MobiDBLite consensus disorder prediction 428 446 - -
Lele32g0792 446 MobiDBLite consensus disorder prediction 408 426 - -
Lele32g0792 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Lele32g0792 446 CDD RRM_RBM24_RBM38_like 69 144 - -
Lele32g0792 446 SMART rrm1_1 70 142 IPR000504 GO:0003723
Lele32g0792 446 SMART rrm1_1 162 234 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0792 Lele-ChrLele32 5244875 5246215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0792 157 336 C2H2 Transcription Factor Family AT2G19380 31.068 1.52e-12 67.8