Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0647 ATGGGATTCAACCCGAGGCTCAGAGAATCTCACCAGCCATTAGTTCCGCCTCTAAGATTCGCAAGCCAATCAGGCACACAAGCTCCAACGGCGCTGGAAAATCCCAGATCTGGAGCCTTGAGCAAGCTGAAGAAAGAAATCTACGAACCCAATATTCCAACTTCAAAGATTCTAGCGAAGAAATTGAGCTTCTATTACAGAGACTCAAAAGGTGTGAATGCCTTGAAGGAGATGGAGAACAGGGAAAAGAACGAAGAAGGAAAGAGTTGTGCGTTATGCTTAGAGGATTTCGTGCCGAAACAGGAGGTAATGGTGACGCCTTGCAAGCACATGTTTCATGAGGATTGTATAATGCCATGGCTGAAAAGCCAAGGTCAGTGTCCGATCTGTAGATTAGTGATCTGCGAGAAAGAGAGGGAGAATCCAATGCCTTTGAACGACGAAGATGTTGGCACCAGGAACCTAATAGCAGGAGAGCTTCTGTCAATTGTGAGGGCCATGGAAGAAGCCTTCCGATTGGGTCCCGAAACTCACTGA 537 0.4693 MGFNPRLRESHQPLVPPLRFASQSGTQAPTALENPRSGALSKLKKEIYEPNIPTSKILAKKLSFYYRDSKGVNALKEMENREKNEEGKSCALCLEDFVPKQEVMVTPCKHMFHEDCIMPWLKSQGQCPICRLVICEKERENPMPLNDEDVGTRNLIAGELLSIVRAMEEAFRLGPETH 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0647 178 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 131 - -
Lele32g0647 178 SMART ring_2 90 130 IPR001841 -
Lele32g0647 178 CDD RING-H2_PA-TM-RING 90 131 - -
Lele32g0647 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 135 IPR013083 -
Lele32g0647 178 Pfam Ring finger domain 89 131 IPR001841 -
Lele32g0647 178 MobiDBLite consensus disorder prediction 17 34 - -
Lele32g0647 178 SUPERFAMILY RING/U-box 81 139 - -
Lele32g0647 178 FunFam RING/U-box superfamily protein 74 148 - -
Lele32g0647 178 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Lele32g0647 178 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0647 Lele-ChrLele32 4050790 4051326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0647 40 174 C3H Transcription Factor Family AT3G58720 47.518 6.33e-40 134