Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0641 ATGGTTTCCCCGGAAAACTCCAATTGGTTTCTCGATTATGGCCTGATTGACGACATATCTGTCCCTGATGGGAACTTCACTGTCCATGCCTCCGGGTTCAACTGGCCAGCGCAGGCAATAAATGGTTCTTCAAATGTCAGCATGGAAATTGATGGCTCATTGGGGGATTCTGATGGCCTCAAAGAGTCTGGTTCAAAGAAGAGGAGTAGATCTGATTCATGTACCACTTCCAGCTCCAAGGCATGTCGTGAGAAATTGCGCAGGGATAGGTTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCCGGAAAGCCTCCCAAAATAGACAAAGCTGCCATTTTGATTGATGCTGTGCGAATGGTGACACAGTTAACGGGTGAAGCCCAGAAGTTGAAAGATTCAAATTCGAGTCTTCAAGAGAAGATAAAAGAGTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAACAGAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACAATCAACGTACAGCATAGTTTCTTGCCTCCTCCACCTTCAATTCCTGCTGCATATGCTGCTGCCGCCCAAGGCCAAGTCCCGGGCAACAAGTTGGTACCATTTATCAGTTATCCAGGAGTTGCCATGTGGCAGTTTATGTCGCCAGCTGCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 717 0.47 MVSPENSNWFLDYGLIDDISVPDGNFTVHASGFNWPAQAINGSSNVSMEIDGSLGDSDGLKESGSKKRSRSDSCTTSSSKACREKLRRDRLNDKFLELGSILEPGKPPKIDKAAILIDAVRMVTQLTGEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKGEKEKLEQQLKTINVQHSFLPPPPSIPAAYAAAAQGQVPGNKLVPFISYPGVAMWQFMSPAAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0641 238 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Lele32g0641 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 141 IPR036638 GO:0046983
Lele32g0641 238 PANTHER BHLH TRANSCRIPTION FACTOR 4 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele32g0641 238 SMART finulus 81 132 IPR011598 GO:0046983
Lele32g0641 238 CDD bHLH_AtILR3_like 80 155 - -
Lele32g0641 238 CDD bZIP 141 173 - -
Lele32g0641 238 FunFam Transcription factor bHLH34 66 124 - -
Lele32g0641 238 Gene3D - 78 155 IPR036638 GO:0046983
Lele32g0641 238 Coils Coil 123 178 - -
Lele32g0641 238 MobiDBLite consensus disorder prediction 51 81 - -
Lele32g0641 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0641 Lele-ChrLele32 4005647 4008150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0641 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.083 1.90e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele32g0641 HLH 3.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0659 29 4124401 4126914 Lele32g0641 32 4005647 4008150 hybridization
Lele30g0740 30 11857424 11859224 Lele32g0641 32 4005647 4008150 hybridization