Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0627 ATGAAGAAGGAGGTGAGGACGGCGAAGGAGAGGAAGATTACCAATGAAAAAAGGTCGACGGTGGTGGCAGAAGAACAAGGGTGCCAGCGATGGTGGTGGTTGAAGAGCAATGCAAGAAGCGATGGGGGTGACGAAAGGGAAGGCTTGCCGGGCAGTGGTCAGGGAAGGAGAAGGAAGACCGGCATGTGGAAGAACGACAGTGGCGGTGCCTCGTGGTCTAAGGCGGCTGTTCTCAACAACTACGACTTCAACCTTCATGCCTCCTCCGCCCTCGGCGGCGGTTCCTGGTCGAGAGAAGGCCGAGCCCAGTCCCAATCTCTTCGTCTCTGGTTTTCACAAATAGTTGAGGAATCAGTTGTCCACATGACAAATGGGCTTAGCAAACGTACCACTACAGAAAAGCTACAGGAGGCATTTTCCGAGTTCGGTGAAGTTGTTAATGCTAGAGTGGTGACTGACAGAGCATCGGGTTACTCTAAAGGGTTTGGCTTTGTAAGATATGCCACCACAGAAGAAGCTGCAAAAGGCATTGCGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCTGAGTATGCGAGACCAAGACCACAACCGGGACAACCTATGCCGCCTCCGTATGGCCAGCGGTGA 639 0.5258 MKKEVRTAKERKITNEKRSTVVAEEQGCQRWWWLKSNARSDGGDEREGLPGSGQGRRRKTGMWKNDSGGASWSKAAVLNNYDFNLHASSALGGGSWSREGRAQSQSLRLWFSQIVEESVVHMTNGLSKRTTTEKLQEAFSEFGEVVNARVVTDRASGYSKGFGFVRYATTEEAAKGIAGMDGKFLDGWVIFAEYARPRPQPGQPMPPPYGQR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0627 212 SUPERFAMILY RNA-binding domain, RBD 125 210 IPR035979 GO:0003676
Lele32g0627 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Lele32g0627 212 SMART rrm1_1 119 193 IPR000504 GO:0003723
Lele32g0627 212 MobiDBLite consensus disorder prediction 38 68 - -
Lele32g0627 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Lele32g0627 212 PANTHER NUCLEOLAR PROTEIN 8 125 200 - -
Lele32g0627 212 MobiDBLite consensus disorder prediction 39 63 - -
Lele32g0627 212 Gene3D - 93 203 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0627 Lele-ChrLele32 3918712 3922563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0627 116 199 Eukaryotic Initiation Factors Gene Family AT3G11400 38.095 4.51e-12 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0643 29 3973282 3975562 Lele32g0627 32 3918712 3922563 hybridization
Lele30g0752 30 11944049 11946405 Lele32g0627 32 3918712 3922563 hybridization