Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0594 ATGAGCAGTCCCCCGGAAGGCGGCTTTCGTTTCGAATTTCCGGCAAATTTCCCAAGAAGATCCTACACCGATGACACCAATAACTGGAACACCAAAATCTTGTATGTAGCCATTATTTCCTTGTCAATCGTCTTGGTCCTCGTCTTCGCCCTTCATCTCTATGCCAGGTACGTCCTCCGCCGCCAAGCCCGCCGTCGCGCTGCCATCCACCATCTAAGCCTCGCCGTGGCTAGATACTCCTCCGGCGATCCACCAAACAACACCGGCCTCGACCCCACCGTCATTGCCTCTCTTCCCACCTTCGTCTTCAAACGAAGAAACGACAAGTCTCGGAACGAAAGCGACGACTACCACCGCCATGTTGATTCTTCGTCTGTTATGGAATGCTCTGTTTGTTTGAGCAATCTGGAAGGTGGAGAGGAAGCGAGGCTGCTTCCTAATTGCAAGCACGTGTTCCACGTGGCTTGTATTGACCGGTGGCTGGCGTCTCATTCGACGTGCCCGATTTGTCGAACCATGGCTCGGCCGTTTATTGAGCCGCGGCCACGTGAAGGTCCGGTCGGGGTGGGGCTGCCCCTGCCTGCTGCTCCGCCGGCGGCGGAACCCACGGCAGAAGGTACATCTGATGGCGGCGGAGCTAAAAGTAGCGGTTCAGTTTCAAGGTTGAGCTCCTTCAGAAGAATGCTAAGTAGAGAAAGATCTTCCAGAAGAATCCAACCTTCTTCTTCTTCCTCTATCTGTGATGATAGTATTGATCGTGATTTAGAGAGACAGTGA 777 0.5354 MSSPPEGGFRFEFPANFPRRSYTDDTNNWNTKILYVAIISLSIVLVLVFALHLYARYVLRRQARRRAAIHHLSLAVARYSSGDPPNNTGLDPTVIASLPTFVFKRRNDKSRNESDDYHRHVDSSSVMECSVCLSNLEGGEEARLLPNCKHVFHVACIDRWLASHSTCPICRTMARPFIEPRPREGPVGVGLPLPAAPPAAEPTAEGTSDGGGAKSSGSVSRLSSFRRMLSRERSSRRIQPSSSSSICDDSIDRDLERQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0594 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 174 - -
Lele32g0594 258 MobiDBLite consensus disorder prediction 178 258 - -
Lele32g0594 258 CDD RING-H2_PA-TM-RING 128 171 - -
Lele32g0594 258 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lele32g0594 258 SMART ring_2 129 170 IPR001841 -
Lele32g0594 258 SUPERFAMILY RING/U-box 128 178 - -
Lele32g0594 258 MobiDBLite consensus disorder prediction 209 225 - -
Lele32g0594 258 FunFam E3 ubiquitin-protein ligase ATL6 79 176 - -
Lele32g0594 258 Pfam Ring finger domain 128 171 IPR001841 -
Lele32g0594 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0594 Lele-ChrLele32 3660526 3661302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0594 26 258 C3H Transcription Factor Family AT2G42360 45.378 5.58e-50 162