LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0574	ATGCAGTTGGAGAAGATGGACGATGGAGAAATTTCAAATATCGGTTTTCCTCAGAACCACCAACCAACCGTCGTATCATCTAACAATACCAATCCTCCTCTGATTCTCAAGAGAAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCGGAAGTGATAGCCCTATCGCCGAAGACTCTAATGGCGACGAACAGGTTTCTGTGTGAAATTTGTGGGAAAGGGTTCCAGAGGGATCAAAATCTGCAACTTCATAGACGAGGACATAATCTTCCATGGAAGCTGAAGCAGAGGACAAGTAAAGAAGTGAAAAAGCGAGTGTATGTGTGCCCAGAAAAAACCTGCGTTCACAACCACCCATCGAGGGCTCTGGGAGATTTGACAGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCTGTTCAGTCTGATTGGAAAGCCCACTCCAAAACCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCATCTTTTCCCGGAGGGATAGCTTCATCACACATAGGGCCTTCTGTGATGCCCTAGCAGAAGAAACAGCAAGAGTGAACGCAGCTTCCAACATCATGAACAACAACATAAGTTACAACACTATAATTGGGGCTGCTTCTTCACTGGGACCAAACAACAATATGGAAACTCATTTTCCTTCAATCTTCAAGCCAATTTCAAACACCAATAATACCGAGGAACAAGCAAATAATCAAATACCTATTAGAGGGCTATCTCTATGGATGGATCATCATCATCAAACAATAGGGCCTAGTAATTGCAATATCAGTAACCCTACTCCTGATCATCAGAATATTCATCATCTTGGGAACCACCAGCTGGTTTCACATCCACAGCAGCTAAATTGGGTGTTTGGAAACAAGCTAATTTCTGGTTCTTCGGCCTCTTGCCAAGAGCTAGCAAGCACCTCAATTGGAATGATAAGTGTTCCTTCCTTGTATAGCTCCCAACATCATCAAACAAACCAAACAATATCCTCGACAAACATGTCGGCGACCGCGCTGTTGCAGAAAGCTGCTCAGATAGGAGCAAACTCGAACACTTGTGACCCCACATTTCTGGGGAGCTTAGGGTTGAAATGTAGCAGTCAAGGTGGTCAAGAAGATGATCATGGAAGTAATAACAAGTATTATGGCATGTACGGTTCAGGTTCAGGTTCAGGTTCGGTTCTCACCAATGTTGGTGGTGGAGGTGGAGGAAGTAATCAGACGACAGAGAACAACAACTCGACAGGTGAAATGTCACAAGTGCACCCAGCAAAACGCCCGAGGCAGGTATTACAGAATGAAGAAGGGGGGCAAACTAGGGATTTCCTTAGTGTTGGTGGTGTGCAAACCATTTGCCACCATTCATCAATCAATGGATGGATCCATATTAGAGTTCGAACTTTGAGTTTGGTCCAAAAACGAAATTGGGCCTTAAATGGGCCTGATACATCAAGCATCAATATCAATGAACGCATCGACACCGAATCCAGGAGAACGAAACAGAGGGAAGAGAATAGAGAGAGAGCGAACAGTATGAAGTTCACCGACTCGCCCGTGATCGAGCTCCCTGTCCGCGGCTCCGTCCTCTCTCTCCAGCAAGATAACGGTTCCATGCACGTTGGAACCTCCGTTTGGCCTTGTTCTCTCGTCCTCGTCAAATTCATCGACCGCTGGGCCCCGCCCCTTCCCTTGGACTCAGACCTCAACACTCCCAACCCTTACTCCGACCTCCTTGATTTCCGATCCAAACGCGCCGTCGAAATCGGCACCGGATGCGGCGTTTCCGGCATGGGCCTCTACCTCTTGGGACTCACCGACATCGTCCTCACCGACATAGCCCCTGTCATGCCCGCACTAAAACGCAACCTTAAAATCAACAAGCCTGTCCTTGGCAAGAACCTCAAGTACTCGACTCTTTACTGGAACAATCTCGATCGAATCAAGGCTCTTAATCCACCCTTCGACTTCGTCATCGCTACCGACGTCGTTTACATTGAAGAATCCGTTGGTCAACTGGTCTCCGCCATGGAGGCCCTTCTCGCCGATAACGGCGTCGTTTTGCTTGGTTACCAGTTAAGGTCCCCTGAGGCACACAAGCTTTTCTGGGAACTGTGTGAGGACGTGTTTTCAATCGACAAAGTTCCTCACGACCACCTTGATCCTGAGTATGCATATGAGGAGACCGACGTTTATGTCCTGAGGAAGAAGAGAAAACAATCATAG	2274	0.4736	MQLEKMDDGEISNIGFPQNHQPTVVSSNNTNPPLILKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNIMNNNISYNTIIGAASSLGPNNNMETHFPSIFKPISNTNNTEEQANNQIPIRGLSLWMDHHHQTIGPSNCNISNPTPDHQNIHHLGNHQLVSHPQQLNWVFGNKLISGSSASCQELASTSIGMISVPSLYSSQHHQTNQTISSTNMSATALLQKAAQIGANSNTCDPTFLGSLGLKCSSQGGQEDDHGSNNKYYGMYGSGSGSGSVLTNVGGGGGGSNQTTENNNSTGEMSQVHPAKRPRQVLQNEEGGQTRDFLSVGGVQTICHHSSINGWIHIRVRTLSLVQKRNWALNGPDTSSININERIDTESRRTKQREENRERANSMKFTDSPVIELPVRGSVLSLQQDNGSMHVGTSVWPCSLVLVKFIDRWAPPLPLDSDLNTPNPYSDLLDFRSKRAVEIGTGCGVSGMGLYLLGLTDIVLTDIAPVMPALKRNLKINKPVLGKNLKYSTLYWNNLDRIKALNPPFDFVIATDVVYIEESVGQLVSAMEALLADNGVVLLGYQLRSPEAHKLFWELCEDVFSIDKVPHDHLDPEYAYEETDVYVLRKKRKQS	757

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0574	757	MobiDBLite	consensus disorder prediction	415	437	-	-
	Lele32g0574	757	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	25	480	IPR031140	-
	Lele32g0574	757	FunFam	protein indeterminate-domain 5, chloroplastic-like	120	199	-	-
	Lele32g0574	757	MobiDBLite	consensus disorder prediction	415	442	-	-
	Lele32g0574	757	ProSitePatterns	Zinc finger C2H2 type domain signature.	68	88	IPR013087	-
	Lele32g0574	757	Gene3D	Classic Zinc Finger	62	89	-	-
	Lele32g0574	757	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lele32g0574	757	FunFam	protein indeterminate-domain 12-like	45	113	-	-
	Lele32g0574	757	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	595	705	IPR029063	-
	Lele32g0574	757	SUPERFAMILY	beta-beta-alpha zinc fingers	65	162	IPR036236	-
	Lele32g0574	757	SMART	c2h2final6	142	162	IPR013087	-
	Lele32g0574	757	SMART	c2h2final6	107	137	IPR013087	-
	Lele32g0574	757	SMART	c2h2final6	66	88	IPR013087	-
	Lele32g0574	757	Gene3D	Vaccinia Virus protein VP39	539	757	IPR029063	-
	Lele32g0574	757	Gene3D	Classic Zinc Finger	100	190	-	-
	Lele32g0574	757	ProSiteProfiles	Zinc finger C2H2 type domain profile.	66	88	IPR013087	-
	Lele32g0574	757	MobiDBLite	consensus disorder prediction	14	32	-	-
	Lele32g0574	757	Pfam	Lysine methyltransferase	544	719	IPR019410	-
	Lele32g0574	757	CDD	AdoMet_MTases	601	707	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0574	Lele-ChrLele32	3564261	3569969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0574	31	478	IDZ Gene Family	AT1G03840	52.465	6.68e-139	417

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele32g0574		Methyltransf_16	2e-25	CL0063