Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0555 ATGAGCATTTCTGAATGCGCAGAGCACAAGTTCTATGATGATACCCACCAGCTTCTCTTCCCAAAGAAATCAATGATCAGGGACATTGACAACTATATGCCGCCCAGGAAGCTCCTCACTCGTCTTGGCGGCTCCAAAACTGCTATCCACGACGTCGCCGATATGTTCAACGACTCGCCACGGTTTTCTTCTTCCGATGAAACCCTTCTGCGGAAATTCCTTCCCCGCAACAACCTTGCCGACGAATCCGACGAGGATGATACCGACCCGTACTCCTCTGAACACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATAGCAGCCGGAGCCACGACTGGACTGACTGCCTGTTCGCTCATCCAGGTGAAAAGGCTCGCCGGCGTGATCCCAGAAAGTACCACTACTCCGGCACTATCTGCTCCGAGTACCGCCGTAGCGGCTCATGCGGACGCGGCGATAGTTGCGAGTTTGCACACGGGGTGTTTGAATGTTGGCTCCACCCAGCAAGGTACAGAACGGAGGCTTGTAAGGATGGTAAAAATTGTAAGCGAAAGGTATGCTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCTGTGAATTGCTCCTCTTATTCACCTGATCAAATCTCAGACAAGAAGAAAAACAAATTCTTGAAACCCTCATTGGCATCAAACAATAATTGCTGTATGTTTTGTCATCGCTCTGCTAATAATGCTAATTCTTCTCCGACTTCCACTCTCTTTGGGATGTCCCAATTTTCACCACCGTTGTCCCCGTCGTCGCCCCCTGTGTCGCCGATTAAAACCGGAACCTCTGCAAATAATGGTTTATCACCAATTTCTGGATACAGTGAAAGAATTAACGGATCTGAGTCTTATAATAATCACCTCATGGTCATGAGCTACAGGGATGCTCTCACTGAGTTGATGAGCTCCTTGGAAGTTATGAATTTCAACGAAGCTTCTTCATCACCTGAAATTTCTGCAACTACCACTAATAATAAGTCTCCAAATCTGCACTGGCTTGACGTTTCTTGCTTTAGCTGTGATGATCAGTTCATTCCTTCATCTTCTTTCGATTGTGAAGATCAGCAGCAGATGATTCCTTCACCATCTTCTCATGAAATTTCCCAGAACCCATTAACAGCTTTATCTGCCTCAAGGAAATTTTCAACTGGAAAATTTGTTAACGAAAGCAGAATCATTGAAGATGATAATAATGGGTCTTCATCATGTGCAACTCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1287 0.4639 MSISECAEHKFYDDTHQLLFPKKSMIRDIDNYMPPRKLLTRLGGSKTAIHDVADMFNDSPRFSSSDETLLRKFLPRNNLADESDEDDTDPYSSEHFRMYEFKVRRCNSSRSHDWTDCLFAHPGEKARRRDPRKYHYSGTICSEYRRSGSCGRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNCSSYSPDQISDKKKNKFLKPSLASNNNCCMFCHRSANNANSSPTSTLFGMSQFSPPLSPSSPPVSPIKTGTSANNGLSPISGYSERINGSESYNNHLMVMSYRDALTELMSSLEVMNFNEASSSPEISATTTNNKSPNLHWLDVSCFSCDDQFIPSSSFDCEDQQQMIPSPSSHEISQNPLTALSASRKFSTGKFVNESRIIEDDNNGSSSCATPDLGWVNDLLI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0555 428 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Lele32g0555 428 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Lele32g0555 428 PANTHER UNKEMPT FAMILY MEMBER 54 427 IPR045234 -
Lele32g0555 428 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Lele32g0555 428 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Lele32g0555 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Lele32g0555 428 Gene3D - 135 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0555 Lele-ChrLele32 3443418 3444704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0555 91 263 C2H2 Transcription Factor Family AT5G12850 47.701 5.33e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele32g0555 zf-CCCH 1.5e-07 CL0537