Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele32g0552 | ATGCCTGCGCAGAAGCGGTCTTTGCCAGAGTCTACGGACGATGGAGAGGACTCAGAACTTTACAACCACCGCCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAGGAAAAGAGTGAAGAGGAAGATAAGCAAGGGGAGCTTGGTGAAGGGGAAGAAGTACAGCAGAACGAGCAAGAGCAAGATAATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCATCTTCTGAACCCGAAGAGAAACCTGAATTTGTGTTTGTCGAACTTCTGGAAATTCGAAAAGATGTCCAGTGTCCAATTTGCCTTGGCATTATCAAGAAAACTCGGACTGTCATGGAATGCTTGCATCGGTTTTGCAGAGAATGCATTGACAAGTCAATGAGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATGCTCTAATTGCTGCTCTGTATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACCCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAACAAGGATACACCACCAGGCGCATTTGTCACAAGGTCACAGCGTAATCAAAGGAATGCTAGGAGACAAAACCATGGAATTGATCAAGGATCAGAAGACAATGAAGAGGAAAATGAAAATAATGGAGAAAAGGATTCATCCTCCACCGATGAGCGGAGTACAGAACCAAAGAAAAAGCGAAAGAGAGGGACAAGAGTTCGTACCTCCCAGCCTTCCTCATCAATGGCAAGCCCTGATGGTGGATTTATAGAGAGTGATGTCGATATAATGAGAGAAAATCGAGGAATTTCTTCAAGGCATCTGTCGAAACCTCAGAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACCCGACATGGCAGTGGCAGTGGTAGCTCTAGCAAGAATTCCCGCAGTAGTCGCGTGTCTAAGTTTGTTGATTATTTAAGAAGCTTAGATGAAAACACAGATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGAAAGTATACCAAGCTTGCAGCAGCCTCACCTTAGCTGTCGGCCAACTTTGTCCGTCAAGCACCTTTGTGAATATATTGCTCGTCAGACCCCGTTGCCACCTGAAGAAGTAGAGATATTGGCGGTTAAAGGATGCTGCAGCATCATCTGTGATAAGTCAGCTGATGAGGCTTCATCCTTGTTAAATGACGAGCTTACTTCAATGATTGTAGATCCCTCCAAAGATGAACTGGAAATTTTGCAAGTACATGAAACTTTGGCAGGGCTCAAGTCCAAATGCATATCTAAAATGGAGCACCTGATTCTGGCATTTAGGAGGAAGGAGAAAATATAG | 1446 | 0.4481 | MPAQKRSLPESTDDGEDSELYNHRHAKQSHRDRELQGEEKSEEEDKQGELGEGEEVQQNEQEQDNKEEKAEDSEESPSSEPEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVTRSQRNQRNARRQNHGIDQGSEDNEEENENNGEKDSSSTDERSTEPKKKRKRGTRVRTSQPSSSMASPDGGFIESDVDIMRENRGISSRHLSKPQKLTWGRGGFRSHTRHGSGSGSSSKNSRSSRVSKFVDYLRSLDENTDEYDIHLMLVSLDKESIPSLQQPHLSCRPTLSVKHLCEYIARQTPLPPEEVEILAVKGCCSIICDKSADEASSLLNDELTSMIVDPSKDELEILQVHETLAGLKSKCISKMEHLILAFRRKEKI | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele32g0552 | 481 | Pfam | Zinc finger, C3HC4 type (RING finger) | 100 | 140 | - | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 9 | 73 | - | - | |
| Lele32g0552 | 481 | SUPERFAMILY | RING/U-box | 88 | 155 | - | - | |
| Lele32g0552 | 481 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 171 | IPR013083 | - | |
| Lele32g0552 | 481 | ProSiteProfiles | Zinc finger RING-type profile. | 101 | 141 | IPR001841 | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 248 | 264 | - | - | |
| Lele32g0552 | 481 | ProSitePatterns | Zinc finger RING-type signature. | 117 | 126 | IPR017907 | - | |
| Lele32g0552 | 481 | SMART | ring_2 | 101 | 140 | IPR001841 | - | |
| Lele32g0552 | 481 | PANTHER | OS11G0578200 PROTEIN | 1 | 480 | IPR044592 | - | |
| Lele32g0552 | 481 | Coils | Coil | 56 | 76 | - | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 326 | 341 | - | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 302 | 341 | - | - | |
| Lele32g0552 | 481 | MobiDBLite | consensus disorder prediction | 199 | 290 | - | - | |
| Lele32g0552 | 481 | CDD | RING-HC_RING1_like | 101 | 141 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele32g0552 | Lele-ChrLele32 | 3419239 | 3425052 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele32g0552 | 94 | 164 | C3H Transcription Factor Family | AT3G23060 | 35.135 | 3.03e-07 | 50.8 |