Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0548 ATGGTATGCCTGAGATTTGACATGGTTGCCTGTACAAGATTGGGTTTCTGGTTGAGTAAGAGAAGTGTATCAGGGTTTCTATTGCAGGCTGCGTTTTGGTGGTGGGCTGTTCTGTTCTTTATTCGTCCCGTGGCAGGTCTGAGACCGCTAAGGGAGAGAACTCGGTCGTGGGGCGATGAGTGGCTAGTCACAAGAAAAGTGGAAAGTGAACTAGGTCCATTTTCACAATGGAACATAACAGGAACATACAAAGGAACATGGAAATTTTTAGATACCACCAATGGCTCTTCCAGGTTTCCTGACATCAGAAAAACAAACGGCGATACTGTAATTGAATTAGTTAGTACACCCACAAAAATAAATGGTGTGCATTATGTGCAGGGAGTAGTTATATTCCATGATGTGTTTGACAATGAGTACAATGTCGCCGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAGCAGTGGAAAAGAGGGAGAGTTAAATCTGGGTGAAGATAATATTTTATCTAATCCATATCATCTGCTTGGAGTCTTCTCATCCCAAGTATTCCAAGAATCTTCACGAGAGAAGATGTGGAGAAGAAAACATTCTCCAATATATGATGTGGAGAAACGTTGCAATTTTGAAATTGCTGCACAAATTTCACGACTGTCATCATCAACAAATGATGGGGATCATAACCGTTTCCATCTTGAAGGGCTAACAGAGAGTCCGGCAACTGATGATGATGGGGACTGCTTCTCACCTTTACTACTAAATGCAACTTCTGTTAACATCGAGGTCTACTATAACAAAGCAGTGAACTACACATTGATGGTTACCTTTGTGTCTTTCTTGCAAGTTCTCTTATTGATTCGACAAATGGAGCATGGCAACACTCAATCTGGAGCTGCCAAGGTTTCAATTTTTATGATTGGCCAACAGGCAATCATGGATGCTTATCTTTGCCTATTACATCTGACTGCTGGGATACTAATTGAGTCTTTGTTCAATGCTTTTGCAACTGCGGCTTTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGGCCTTTCAACAATGGGGAAGGTTGGGAAACAATGAGACGGGAGCTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTGTTAGGTGGCATTTTGCTCATGTATGAATTTCATAGTTATTTGAGACCTATTATTCTTCTTATATACTCCTTTTGGATACCTCAAATTATCACCAATGTTGTTCGTGATTCACGCAAACCATTGCATCCTCATTATATCCTAGGGATAACCATCACTCGGCTAGCAATCCCATTATATATGTTCGGTTGCCCTAACAATTTCATGCACGTGGAACCCCACAAGAACTGGTGTATTTGTTTGGTTGTATTTGCTGGATTCCAAGCCGGGGTTCTTTTGCTTCAGCACTACCTTGGATCCCGTTGGTTCATTCCTCGACAGATTCTACCTGAGAAATACAGCTATTATAGGAGGGTTGATCAAGACAGAAGTCATGCTTCAGACTGTGTTATTTGCATGACGGCCATTGATTTTTCTCAGAGATCCAATGAATGCATGGTAGCACCCTGCGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCGACTTGCCGCCGGCCGCTGCCTCCGGCCTAG 1731 0.4211 MVCLRFDMVACTRLGFWLSKRSVSGFLLQAAFWWWAVLFFIRPVAGLRPLRERTRSWGDEWLVTRKVESELGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGDTVIELVSTPTKINGVHYVQGVVIFHDVFDNEYNVAGAQIRVEGVYIWPFRQLRMVASSGKEGELNLGEDNILSNPYHLLGVFSSQVFQESSREKMWRRKHSPIYDVEKRCNFEIAAQISRLSSSTNDGDHNRFHLEGLTESPATDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHGNTQSGAAKVSIFMIGQQAIMDAYLCLLHLTAGILIESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFNNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHSYLRPIILLIYSFWIPQIITNVVRDSRKPLHPHYILGITITRLAIPLYMFGCPNNFMHVEPHKNWCICLVVFAGFQAGVLLLQHYLGSRWFIPRQILPEKYSYYRRVDQDRSHASDCVICMTAIDFSQRSNECMVAPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0548 576 Pfam Ring finger domain 525 570 IPR001841 -
Lele32g0548 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Lele32g0548 576 SMART ring_2 526 569 IPR001841 -
Lele32g0548 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
Lele32g0548 576 SUPERFAMILY RING/U-box 512 575 - -
Lele32g0548 576 PANTHER RING ZINC FINGER PROTEIN 136 575 - -
Lele32g0548 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Lele32g0548 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 576 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0548 Lele-ChrLele32 3400338 3407312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0548 517 574 C3H Transcription Factor Family AT1G53010 36.667 5.70e-08 51.2