Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0546 ATGAAAGCTGACGCCTCAGAACACTATATCATCTTCGAAGAACCAGGAACTATAATGGAAACTCAAGGGAACCATAATCAGCCTCCTCCTCCTCCTCCTTCCCCAAAAGTCGAAAGAAAAATCATAGAGAAAAACAGAAGAAACCAGATGAAGATTCTCTACTCTAAGCTCAATTCTCTCCTCCCAAACCATAACCCCAAGGAAATACTGCCACTTCCTGATCAGATAGATCAGGCGATAAACCATATAAAGAATTTGGAGGCGAAGTTGAAGATGGCTCAAGAGAAGAAAGATAGCTTGACGGAAAAGAAGAGATCACTTGCTAGCTGCTCGACAAGTAGCAGCGTTCTTCGGACTAAGAAAACTGTGGTGAGATCACCAGAACTTGAGATTCGTGAGGTGGGTTCGTCACTAGAAGTTGTTCTGATCACTGGATTAGATGACCGGTTCGTTTTCTGTGAGATCATTCGCATGCTCCATGAAGAGAACGTTCAGGTCGTGAGTGCTAATTCCTCGCTTGCTGGCGATTCAATGCATCACGTAGTGCATGCAGAGATTGAGCAAACGACGTTTCAATTTGGAGCAACCAAGGTAAGCGAGAGGCTAAAAAGATTTGTGTATGGATCATTAAGTGATGTGGAAATAGACCCATCAGAGTTGTGGGATTTTGACAATATTAATGCTTCTGATCCCTGGAGCTTCTAA 705 0.4326 MKADASEHYIIFEEPGTIMETQGNHNQPPPPPPSPKVERKIIEKNRRNQMKILYSKLNSLLPNHNPKEILPLPDQIDQAINHIKNLEAKLKMAQEKKDSLTEKKRSLASCSTSSSVLRTKKTVVRSPELEIREVGSSLEVVLITGLDDRFVFCEIIRMLHEENVQVVSANSSLAGDSMHHVVHAEIEQTTFQFGATKVSERLKRFVYGSLSDVEIDPSELWDFDNINASDPWSF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0546 234 MobiDBLite consensus disorder prediction 16 37 - -
Lele32g0546 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 86 IPR011598 GO:0046983
Lele32g0546 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 109 IPR036638 GO:0046983
Lele32g0546 234 FunFam Transcription factor bHLH162 27 112 - -
Lele32g0546 234 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 34 207 IPR015660 -
Lele32g0546 234 Coils Coil 76 103 - -
Lele32g0546 234 Pfam Helix-loop-helix DNA-binding domain 37 87 IPR011598 GO:0046983
Lele32g0546 234 Gene3D - 33 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0546 Lele-ChrLele32 3385064 3386085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0546 34 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 1.71e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele32g0546 HLH 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0849 11 8503417 8511101 Lele32g0546 32 3385064 3386085 CCT
Lele12g0494 12 13083301 13091236 Lele32g0546 32 3385064 3386085 CCT
Lele09g0846 09 6711917 6712622 Lele32g0546 32 3385064 3386085 CCT
Lele30g0843 30 12510693 12511666 Lele32g0546 32 3385064 3386085 hybridization