LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0542	ATGGGCTGCATATGTTCCAAGACATCTGCTGTGGAAGACAGCCGGGAAGATTTGACAAAGAAATCATTATCAAGCAAGAGAGGGTCAGAGCTGCGTGTTTCAAGGTTGAATTCGTCTAAAAGAAATGAGGGGGTTTGGGCAACAGATAAGTTAGATGGAAGTAGTGTGAAGATTTCATTGATTGACAAGAAAACCAGTGGCTCATTTCAGTTGTATGATGATCAAGTGGGAAATAAGGAAATAGAGAAGCCTGAATTAACTGCTCTTAGTAATCCTGGTCTTGGGAAAGTTCCAAAGGCCGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGAGTTGGCTTTCTTCTGTGGCTGGTGAAGCTATCAAGGGATGGATACCTCGAAGTGCCAATACTTTTGAAAGGTTAAATAAAATTGGCCAAGGAACTTACAGTACTGTTTATAAAGCACGTGATGTGACTCACCAAAAGATTGTTGCTTTGAAGAGAGTTCGGTTTGATAATCTTGATCCTGAGAGTGTAAAGTTTATGGCAAGGGAAATCCTCCTTCTGCGTAGACTTGATCATCCAAATATTATCAAGTTGGAAGGCTTGATAACATCTCCAACCTCTCGCAGCTTGTACCTCATTTTTGAGTATATGGAGCATGATCTTTCTGGTCTAGCATCACGTCCTGGCATCAAGTTTTCTGAACCACAGGTTAAGTGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCATCTTAAAAATTGCGGATTTTGGGTTGGCAAGTTTCTTTGACCCCAATCATAGTATTCCATTGACCAGTCGTGTAGTTACTCTCTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTCATTATGGAGTCGCGTTAGATTTGTGGAGCACTGGTTGCATACTTGGGGAACTATATACTGGCAGGCCTATATTGCCAGGAAAAACTGAGGTTGAGCAACTGCACAGGATCTTCAAGCTTTGTGGATCACCATCTGAGGATTATTGGGTTAAACAGCGATTGCCACATGCTGCAGTATTCAGGCCTCCTCACCGATACAGAAAATGTATTACAGAAACATTTAAAGAATGTCCATCTGCTTCAGTGAGACTTATAGAGACACTACTTTCTATAGATCCTGCACAACGAGGGACAGCAGCAAGTGCTCTAAAAAGTGAGTTCTTCATTACAGATCCCCTTGCTTGTGATCCATCAAGTTTACCAAAGTATCCTCCCAGCAAAGAGATTGATTCTAAACTACGGGATGAAGAAACCAGAAGGCAAGTAGTTAGAAAAGAAAAGGATCCCGGCGTAACTATTCCATCGAAGCACAATGTTGTTGGCCCACGCATATCATCAACACAGCAAGGACAACATTCCAATTCAAAGAGCCGAAGTGAAGTGTTTAACAACCACCCCCACAGAGAACCTGTTTCTGGATTTTTGGTTTGTCCCCCACAGAAACAGTCACAACATGTTAAAGAAATGGAAAATAATTTCAGTGGTCCTCTTTATAAGAGACCTTCACATTCAGGTCCACTGGTTCCTGGTATTCAATTAGCAGCAAGGAGTGGAAAGGAAGTTGATGAAGGGCCTCTTGGTTCCAACAGAGTCAACTTGTCAAAACTATCCGGCTTAGTCGCCTCGAGGACTACTTCATCATCTGAAGATCATGAGGAAAAAACAATTTCTTTGCTGCCTAGAAAAACAATTGAAGTTAGAAAACCTGTAGAGTCAACTAATGTCTCAGAGTCAAGAAGGCATGATAGGAAACGCCATTCCCCTCGAATTGTGGATCTCAGTCAGATAGAAAATGCAAGAGGCTCCGCTCAAGAATTAACTCAGGGAGGCCGTGGTGGGTACATGGAAAACAAGATGTATCTCTCTGGTCCATTACTAGCTTCTTCAAACAACATGGATCAGATGCTTAAAGAGCATGATCGAAATATCCAAGAATTTTCAAGACGAGCACGAATTGACAAGTCAAGAGGTGGGAAAATTCGTGCACTGAGAAAGTAG	2085	0.4245	MGCICSKTSAVEDSREDLTKKSLSSKRGSELRVSRLNSSKRNEGVWATDKLDGSSVKISLIDKKTSGSFQLYDDQVGNKEIEKPELTALSNPGLGKVPKAAEGEQVAAGWPSWLSSVAGEAIKGWIPRSANTFERLNKIGQGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREILLLRRLDHPNIIKLEGLITSPTSRSLYLIFEYMEHDLSGLASRPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNHSIPLTSRVVTLWYRPPELLLGASHYGVALDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWVKQRLPHAAVFRPPHRYRKCITETFKECPSASVRLIETLLSIDPAQRGTAASALKSEFFITDPLACDPSSLPKYPPSKEIDSKLRDEETRRQVVRKEKDPGVTIPSKHNVVGPRISSTQQGQHSNSKSRSEVFNNHPHREPVSGFLVCPPQKQSQHVKEMENNFSGPLYKRPSHSGPLVPGIQLAARSGKEVDEGPLGSNRVNLSKLSGLVASRTTSSSEDHEEKTISLLPRKTIEVRKPVESTNVSESRRHDRKRHSPRIVDLSQIENARGSAQELTQGGRGGYMENKMYLSGPLLASSNNMDQMLKEHDRNIQEFSRRARIDKSRGGKIRALRK	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	668	694	-	-
	Lele32g0542	694	ProSiteProfiles	Protein kinase domain profile.	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g0542	694	CDD	STKc_CDK9_like	133	417	-	-
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	598	618	-	-
	Lele32g0542	694	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Lele32g0542	694	Pfam	Protein kinase domain	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	436	461	-	-
	Lele32g0542	694	FunFam	probable serine/threonine-protein kinase At1g54610	216	457	-	-
	Lele32g0542	694	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	668	686	-	-
	Lele32g0542	694	Gene3D	Transferase(Phosphotransferase) domain 1	216	457	-	-
	Lele32g0542	694	SMART	serkin_6	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g0542	694	SUPERFAMILY	Protein kinase-like (PK-like)	126	422	IPR011009	-
	Lele32g0542	694	Gene3D	Phosphorylase Kinase; domain 1	120	215	-	-
	Lele32g0542	694	PANTHER	CELL DIVISION PROTEIN KINASE	131	422	-	-
	Lele32g0542	694	FunFam	probable serine/threonine-protein kinase At1g54610	120	215	-	-
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	428	503	-	-
	Lele32g0542	694	MobiDBLite	consensus disorder prediction	468	489	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0542	Lele-ChrLele32	3352500	3356396	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0542	125	495	Core Cell Cycle Gene Families	AT5G10270	45.995	1.31e-114	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lele32g0542		Pkinase	3e-67	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g1135	17	21563113	21570059	Lele32g0542	32	3352500	3356396	hybridization
	Lele30g0847	30	12540688	12544601	Lele32g0542	32	3352500	3356396	hybridization