Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0530 ATGATTCTTACGTTGTACATACTTGTGCTTTTCAGATTTAGACATCCGAAATATCACATTGTAAACCAGAAAATGGCTGCCTTGGATCAGTATATTGAGGAGGCTGTGTCCCAAACCAATTCCTTCGGTGAAGATGACACTTGTTCAGAAAAGTGGGAATCTGGTGGAGATTCTGATAGAAATGAGTCTAATGGCTTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTATTGCTGGCCCTGCATTTACAAATGGCTTCATTTTCACAATCTTTCCAACGAAGAAAATGGCGAACAGAGTCATCCACAGTGTCCAGTATGCAAAACCGAAGTTTCCCAATCCTCGCTCGTTCCACTCTATGGCAGAGGCCAAACCCCAAAACCTTCCTCCAAATGCAAGTCCCACCATGTGAGTACTATGATCCCACAAAGACCACATGGTCCTTTGTCCATGGTTGATCCTCGAAGACCATTTAATGCAACTACGAGTGCAGTTCCACAACCGTCTTCCCAATTTTATCATCATGGTCATTATCCTTATTATCCTCCTCCTCCTCAAGAGTTCAACTCAATCCCTAGCAGTTCCAACTCAGGAATGCTTGGCATGGGCATTTATGGTGCACTAAGAAACGCATTTGATTCAAGAATTGGTGTTTTTGGTGAGATGATATATGCGAGAGTGTTTGGGAACCAAGTGACCGACATATATGCTTACCCTAATACATATAATCTAGCAGGGAACAGCAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGCAACTGAATAGAATATGCTTTTTCCTGCTTTGTTCTTTAGTTTTGTGTCTTCTCTTATTCTGA 876 0.4224 MILTLYILVLFRFRHPKYHIVNQKMAALDQYIEEAVSQTNSFGEDDTCSEKWESGGDSDRNESNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHFHNLSNEENGEQSHPQCPVCKTEVSQSSLVPLYGRGQTPKPSSKCKSHHVSTMIPQRPHGPLSMVDPRRPFNATTSAVPQPSSQFYHHGHYPYYPPPPQEFNSIPSSSNSGMLGMGIYGALRNAFDSRIGVFGEMIYARVFGNQVTDIYAYPNTYNLAGNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0530 291 CDD RING-HC_AtRMA_like 66 118 - -
Lele32g0530 291 SUPERFAMILY RING/U-box 67 124 - -
Lele32g0530 291 ProSiteProfiles Zinc finger RING-type profile. 68 118 IPR001841 -
Lele32g0530 291 MobiDBLite consensus disorder prediction 46 60 - -
Lele32g0530 291 SMART ring_2 68 117 IPR001841 -
Lele32g0530 291 MobiDBLite consensus disorder prediction 41 61 - -
Lele32g0530 291 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 52 131 - -
Lele32g0530 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 132 IPR013083 -
Lele32g0530 291 Pfam Zinc finger, C3HC4 type (RING finger) 68 117 IPR018957 GO:0046872
Lele32g0530 291 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Lele32g0530 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 30 288 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0530 Lele-ChrLele32 3301891 3302766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0530 44 291 C3H Transcription Factor Family AT4G28270 36.111 2.62e-42 142