Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0496 ATGACGATTGGTTCCATCTTCAGCAAAGCTGCCAGAACTTTCCATAGCTATCCTTCTACTTCCAAGCTTCTCCTCCTCTGCAGTCTCAGTGGTGGAGGTGTGGTAGCATACTCAGAATTACAATCCGATTCTGGACCTCCAAGAATTGAACCTAATGAGTGTGGGAAAAAGAGAGTAGTGGTTCTTGGAACAGGATGGGCAGGTACCAGTTTCCTTAAGGATCTGGATGCTTCGATATACGATGTTCAGGTTGTTTCGCCTCGCAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCAAGGAGCATTGTGGAGCCAGTTCGGAACATCCTAAAAAAGAGAAAAGGAGAAGTTAAATTTTGGGAGGCAGAGTGTGTCAAGATTGATGTTGCAAACAAAAAAGTTTTTTGTCAATCCAATATTGATGCCAACTTAGTGGGAAATGGCGAATTTTCTCTGGAATATGACTTTTTGGTTGTAGCAACAGGAGCGCAAGTGAATACTTTTAATACTCCAGGTGTCAAGGAGAACTGTCATTTTTTAAAGGAGGTGGAGGATGCTCAGAGGATCAGAACGTCTGTGATAGATTGCTTTGAGAAGGCCATTCTTCCTAGTTTAACTGAAGAAGAGCGACGGATAAATCTTCATTTTGTGATTGTTGGTGGGGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGATTATGTCCATGAAGATCTATCTAAATTATACCCAATAGCTAAAGATTTGGTGAAAATAACAATGATCCAGTCGGGAGATCACATCTTGAACACGTTTGATGAAAGAATCAGTACATTTGCGGAGCAGAAATTCAGCAGAGACGGTATATTGGTTCAAACAGGATGCCGAGTTACCGAAGTTACTGATAAGGAAATTAAAATGAAGATAAAATCAACAGGAGAGGTTTGCTCAATACCTCATGGATTGGTAGTCTGGTCCACTGGCATTGGGACTCTTCCAGTTGTGAGGGATTTCATGGAACAAATTAATCAGGCTAATAGAAAGGTCCTGCAGACTGATGAATGGTTACGGGTGATAGGATGTGAAGCCGTGTACGCTATTGGGGACTGTACTTCAATACATCAACGTAAAATCATGGATGACATCTCAACCATATTCAAGGCTGCGGACAAAGACAACTCTGGTACCTTAACGATTAAAGAATTCAAGGATGTGATGGATGACATCATCTTGAGATATCCCCAAGTGGAACTATATCTGAAGAGCAAGCATATGCTTGATGTGGCTGATTTGTGGAAAGATCCTCAGGGGAAAGACAGAGAGGAAGTAGATATAGAAGGGTTTAAGTCAGCCCTATGTCAAGTGGATTCACAGATGAAGAGTCTGCCAGCAACAGCACAGGTTGCTGCCCAACAAGGTGCATATCTAGCTAGCTGCTTTAACGGCATGGAGCATTGCACTGAGAATCCTGAAGGTCCAATAAGATTTAGAGAATCCGGACGCCATAAATATCGTCCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTCTTGGTGGAGAGCAAGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCAATGGGTCACAGTACTCAATGGCTTTGGTACTCTGTATATGCCAGCAAGCAAGTGAGCTGGCGCACAAGGGTGTTGGTGTTATCTGATTGGACAAGAAGATTCATCTTTGGAAGAGATTCAAGTCGTATCTGA 1737 0.4295 MTIGSIFSKAARTFHSYPSTSKLLLLCSLSGGGVVAYSELQSDSGPPRIEPNECGKKRVVVLGTGWAGTSFLKDLDASIYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNILKKRKGEVKFWEAECVKIDVANKKVFCQSNIDANLVGNGEFSLEYDFLVVATGAQVNTFNTPGVKENCHFLKEVEDAQRIRTSVIDCFEKAILPSLTEEERRINLHFVIVGGGPTGVEFAAELHDYVHEDLSKLYPIAKDLVKITMIQSGDHILNTFDERISTFAEQKFSRDGILVQTGCRVTEVTDKEIKMKIKSTGEVCSIPHGLVVWSTGIGTLPVVRDFMEQINQANRKVLQTDEWLRVIGCEAVYAIGDCTSIHQRKIMDDISTIFKAADKDNSGTLTIKEFKDVMDDIILRYPQVELYLKSKHMLDVADLWKDPQGKDREEVDIEGFKSALCQVDSQMKSLPATAQVAAQQGAYLASCFNGMEHCTENPEGPIRFRESGRHKYRPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVLSDWTRRFIFGRDSSRI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0496 578 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Lele32g0496 578 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Lele32g0496 578 SUPERFAMILY FAD/NAD(P)-binding domain 223 376 IPR036188 -
Lele32g0496 578 Gene3D - 430 577 - -
Lele32g0496 578 Gene3D - 47 399 - -
Lele32g0496 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 408 - -
Lele32g0496 578 PANTHER NADH DEHYDROGENASE 53 578 IPR045024 GO:0003954|GO:0006116
Lele32g0496 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 425 577 - -
Lele32g0496 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 379 IPR023753 GO:0016491
Lele32g0496 578 SUPERFAMILY EF-hand 336 464 IPR011992 -
Lele32g0496 578 SUPERFAMILY FAD/NAD(P)-binding domain 56 275 IPR036188 -
Lele32g0496 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Lele32g0496 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Lele32g0496 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Lele32g0496 578 SMART efh_1 383 411 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0496 Lele-ChrLele32 3101763 3105679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0496 5 578 Chloroplast and Mitochondria Gene Families AT4G21490 66.263 0.0 788
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele32g0496 32 3101763 3105679 Lele09g0875 09 7039421 7041200 CCT
Lele32g0496 32 3101763 3105679 Lele10g0803 10 6436091 6441603 CCT
Lele32g0496 32 3101763 3105679 Lele12g0461 12 12502284 12506883 CCT
Lele29g0518 29 3140986 3145047 Lele32g0496 32 3101763 3105679 hybridization