Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0419 ATGGATTGGAGCAGAGGCCATACCTTAGGCCGCGGCTCCTCCGCCACCGTCTCTCTGGCTTCCTCCTCCGACCTCGTCTTCGCCGTCAAGTCATCGGAGCTCTCTCGCTCTCTGTTCTTACAGAGAGAACAGAGTATTCTTTCTACGATTTCTTCTCCTTATATTGTTGCCTATAAAGGTTGTGATGTTACTAGAGAGAATAACAAGCTCTTTTACAATCTCTTCATGGAGTACATGCCCTTTGGTACTGTTCTTCAGGCGGTTCAACGGCACAGTGGCCGTCTTGACTTGGGGGTGGTGGGGTTCTACACGTGGCGGATTTTGCAGGGGCTGGAGTATTTGCATTCCAACGGGTTGGTACATTGTGACATTAAGAGCACCAATATATTGATTGGTGAAGATGGAGCGAAGATTTCGGATTTTGGGTGTGCCAAGCTGGTTGATGACGACACGGCAGCGCCGATCAGCGGCACGCCGATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTGTGCTGGTGATATTTGGGCACTCGGGTGCACAGTGATCGAAATGGCTTTTGGGGTTTCGCCGTGGCCGAACATGGCGGACCCTTTCTCGGTTCTTCACCGGATCTCATATTCGGGCCAGACGCCTGAGATTCCAGCGTTTCTACCGGAGGAAGCAAAGGATTTCTTAGACAAGTGCTTGAGGAGGAATCGAACAGAGAGATGGACGGCTACTCAACTGTTAAAACACCCATTCGTCACGGAATTCAATTCGAAATCCATCGACAAGGAAATTCAAAACCTCAATTCGAGTTCACCTACATGCGTACTTGAGCAGGGGTTTTGGAATTCCATGGAAGAAGCGGAAACTCACGGAAATTTGACCCGTAAGAGGTTAGAAATTTCTGCCGCCTATAGAATCAGAAGGTTAGCTGAGTTCTCATCAGAACCCAGATGGACACATGATGATAATTGGATCACAATCAGAGGAAACGACGAAGCATCAGCTTCCACCAGCGACGATGGTTCAGAAGAGTCGGTGAAAAGCAACGGTAGAAGTAGAATTACGGGGTGTTTCACAGGAAATTACGAATTTAGCGAAATTAGTGATATGATTAGTACTCATTACAATTTTGAGAGAGGCACTGTGAATAGGGTGTTAGAGCCTTCCATGTCAGTTTTCTCATGA 1185 0.4835 MDWSRGHTLGRGSSATVSLASSSDLVFAVKSSELSRSLFLQREQSILSTISSPYIVAYKGCDVTRENNKLFYNLFMEYMPFGTVLQAVQRHSGRLDLGVVGFYTWRILQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKLVDDDTAAPISGTPMFMAPEVARGEEQGCAGDIWALGCTVIEMAFGVSPWPNMADPFSVLHRISYSGQTPEIPAFLPEEAKDFLDKCLRRNRTERWTATQLLKHPFVTEFNSKSIDKEIQNLNSSSPTCVLEQGFWNSMEEAETHGNLTRKRLEISAAYRIRRLAEFSSEPRWTHDDNWITIRGNDEASASTSDDGSEESVKSNGRSRITGCFTGNYEFSEISDMISTHYNFERGTVNRVLEPSMSVFS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0419 394 SUPERFAMILY Protein kinase-like (PK-like) 2 273 IPR011009 -
Lele32g0419 394 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0419 394 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Lele32g0419 394 MobiDBLite consensus disorder prediction 329 350 - -
Lele32g0419 394 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
Lele32g0419 394 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0419 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Lele32g0419 394 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0419 394 CDD STKc_MAPKKK 2 252 - -
Lele32g0419 394 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
Lele32g0419 394 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0419 Lele-ChrLele32 2642419 2643603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0419 1 284 MAP Kinase Kinase Kinase AT2G32510 55.479 8.47e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele32g0419 Pkinase 1e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1012 11 17230956 17231345 Lele32g0419 32 2642419 2643603 CCT
Lele12g0308 12 2876701 2877090 Lele32g0419 32 2642419 2643603 CCT
Lele09g1011 09 19179837 19183327 Lele32g0419 32 2642419 2643603 CCT
Lele10g0970 10 20934551 20938100 Lele32g0419 32 2642419 2643603 CCT
Lele32g0419 32 2642419 2643603 Lele09g1009 09 19132519 19148816 CCT
Lele32g0419 32 2642419 2643603 Lele10g0967 10 20882437 20890050 CCT
Lele32g0419 32 2642419 2643603 Lele11g1011 11 17215001 17223284 CCT
Lele32g0419 32 2642419 2643603 Lele12g0309 12 2892494 2900094 CCT
Lele29g0438 29 2675315 2676511 Lele32g0419 32 2642419 2643603 hybridization
Lele30g0967 30 13276261 13277406 Lele32g0419 32 2642419 2643603 hybridization