Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0403 ATGGATCGTCGCATCCATGGCGTCACAACGCTCCGCATCTCTCTTCTCCTCCTTCTTTCCGGCTTCCCCTTTCTCTCATTCTCGGATTCCCCAAATCCCAGATTGTCGGTCGCTTCTTCCTCCGGTCAAATAAACTCCAACTCAGTTCTGGTGGCTCTTCTGGACTCGCATTACACGGAACTTGCCGAGATGGTCGAGAAGGCCATGCTTTTGCAGACTCTCGAAGACACTGTCGGTGCCAACAACATCACCATCTTCGCACCCAGAAACGAAGCTCTCGAGCGCGATCTCGACCCTGAGTTCAAGCGCTTCCTTCTCGAACCCGGTAATCTCAAGTCTCTTCAGTCCTTGCTCATGTTTCATATCATTCCCACTCGGATTGGATCGCAGGCGTTGCCCACTCCAACCGGGTCAGCCCGTCACGAGACGCTCTTTAAGTCCGAGTTCATTCACCTTGCCAATAATGGCACCGGGGAATGGACAGTGGATCGCGCCAAGATCATCCACCCCGACGTAGTCTCCCGACCCGATGGAGTGATCCACGGGATTGAGCGCCTCCTGGTCCCTCGTTCCGTCCAAGATGACTTCAACCGCCGGCGGAGTCTTCAGTCCATTACGGCGGTGAAGCCCGAGGGAGCACCGGAGGTTGACCCGAGGACTCATCGCCTCAAGAAGCCTGCTCCTCCGGTTAAACCAGGTTCGCCGCCGGTTTTGCCCATTTACGACGCCATGGCTCCGGGACCCTCTCTGGCGCCCGCCCCAGCTCCCGGTCCCGGTGGACCACACCATCATTTCAACGGCGAAGCCCAGGTCAAGGATTTCATCCAGACACTGCTTCATTACGGTGGGTACAATGAAATGGCCGACATTTTGGTGAATCTGACATCCTTGGCAACTGAAATGGGTCGGTTAGTGTCTGAGGGTTATGTCCTAACTGTGTTAGCTCCGAACGATGAAGCCATGGCTAAACTAACCACGGACCAGCTGAGCGAACCGGGTGCTCCGGAGCAGATAATGTACTACCATCTAATACCTGAATATCAAACCGAAGAGAGTATGTACAATTCAGTTCGAAGGTTTGGTAAGGTCCGGTACGATACTCTCCGGTTACCGCATAAGGTGGTAGCTCAGGAGGCAGACGGGGTATCGACGGGGTTTTGTTCCCACCAGAGGAGGAGGAGAAACCGGTGGCCCGGACGGTTCAACCCGCCAAAGTCGTGGTCAAGCATAGAAGAGGAAAATTGCTGGAAGCTGCATGCCGGATGCTTGGAACCTTTGGACAGGATTCTATATTCACCACTTGCCATTGAAGAACCAGTCCTTTGGCTGGCAACATACGTATTCACAATTATATTGGTAGAAGTCCCGAAGATGTAA 1377 0.5381 MDRRIHGVTTLRISLLLLLSGFPFLSFSDSPNPRLSVASSSGQINSNSVLVALLDSHYTELAEMVEKAMLLQTLEDTVGANNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQSLLMFHIIPTRIGSQALPTPTGSARHETLFKSEFIHLANNGTGEWTVDRAKIIHPDVVSRPDGVIHGIERLLVPRSVQDDFNRRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPVKPGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNSVRRFGKVRYDTLRLPHKVVAQEADGVSTGFCSHQRRRRNRWPGRFNPPKSWSSIEEENCWKLHAGCLEPLDRILYSPLAIEEPVLWLATYVFTIILVEVPKM 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0403 458 ProSiteProfiles FAS1/BIgH3 domain profile. 271 395 IPR000782 -
Lele32g0403 458 Gene3D FAS1 domain 263 383 IPR036378 -
Lele32g0403 458 SUPERFAMILY FAS1 domain 250 365 IPR036378 -
Lele32g0403 458 SUPERFAMILY FAS1 domain 44 190 IPR036378 -
Lele32g0403 458 MobiDBLite consensus disorder prediction 210 236 - -
Lele32g0403 458 SMART fasc_3 84 190 IPR000782 -
Lele32g0403 458 SMART fasc_3 312 433 IPR000782 -
Lele32g0403 458 ProSiteProfiles FAS1/BIgH3 domain profile. 45 187 IPR000782 -
Lele32g0403 458 Gene3D FAS1 domain 49 190 IPR036378 -
Lele32g0403 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 8 382 IPR044654 -
Lele32g0403 458 Pfam Fasciclin domain 57 189 IPR000782 -
Lele32g0403 458 Pfam Fasciclin domain 296 361 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0403 Lele-ChrLele32 2557789 2560708 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0423 29 2599955 2602794 Lele32g0403 32 2557789 2560708 hybridization
Lele30g0986 30 13368279 13371185 Lele32g0403 32 2557789 2560708 hybridization