Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0402 ATGGGGAACTGGTTCAAATGTTATGAGTATGGGATTCTAACTCTTGCTTTCTTTTCTATGGCATTTGCATGTCAATGGGAATACGAAAGACCGTATTTGTTTTGTTTCTGTTTTCGTTATGACTCTGTAGTTGGAGGCCAAGATAGTTCAGGGAAGAGGAAAACTAGCAAACATCTATCCTCTGACAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCTTCCTGCTAAAAGGAAGAATTCCAAGGACAGTGAGGACTTGCAGAAGTCTCTTCCTAAAAAGAATCTTTTAGATGATGAAGATGATGACTCTTCCTTGGTCACAGCTAAAAGGAAATCAGTTGATACCACCCCAATCAAAAAATTGAAGTGTGAATCTGGTAAGGGAGTTCCACTTAAGTCTCCTGATTTGAAAAAAAAAATGATGAGGAAGATGTTAAAGATGATGTATCACCCATTAAATCTTGGTGGCAGGGGCGTGGAGGAAGAGGAGCATCTGCACAATCATCTAGTGGACGGGGAAGTCCCTGAAGGTGCTCCTGATTGTTTGGCCAGTTTGACTTTTGTCATCAGTGGAACATTGGACAGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGATTTTGGAAGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCCAGTCCAGGAAGAGAAACCACTTCTTCAACAGTTGATAGGACCACTGCGAGTGTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATATGTACTCCATCAGTCAAGAGGATTTTGATTCTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCGTACCGCTTGCTGTTAAATCTGCACTGACAAAAGCATACAAAGAAGAAAGCAAGTGTCGGATGGTTCGAGCTGCAGATCTAGCCACTATTCCTGGAAAGGAAAGGGCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCATCCGACGAAGGACTGGAACAGGGTGAAGGTGATACCCTGGGAGAGAGTGAAGAAGAGAATTCCTCGGACACAGAGGAGTCAACCATGCGGGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGTGCAGAAACACCAGCTGGAAGAGGTAAAGGTGCTTCTGCATGGGCCGAGAAGGGTGGTCAAGCTTCAAGAGGTAGAGGTGGGGCAAAAAGAAAGAGTTTCATCCCCCTCCTCTTCTTTCTCATCCTCCTTTGTCAGCATCTGCTCACTCCAGATCTAGATGATGTCAAAGGAGGCAACATGGAGAAGAAATACTAG 1341 0.4333 MGNWFKCYEYGILTLAFFSMAFACQWEYERPYLFCFCFRYDSVVGGQDSSGKRKTSKHLSSDKNKKDEKEAQELPAKRKNSKDSEDLQKSLPKKNLLDDEDDDSSLVTAKRKSVDTTPIKKLKCESGKGVPLKSPDLKKKMMRKMLKMMYHPLNLGGRGVEEEEHLHNHLVDGEVPEGAPDCLASLTFVISGTLDRENGIIIGLVVGWGKTQQWAKTLGFWKICMFTFLLLVNPVQEEKPLLQQLIGPLRVLPKDEAVQKVVEFMNMYSISQEDFDSIVELSKFKGHPNPLDGVPLAVKSALTKAYKEESKCRMVRAADLATIPGKERAVKKRVAAILEPSDEGLEQGEGDTLGESEEENSSDTEESTMRVQLDLKGTGNSSAETPAGRGKGASAWAEKGGQASRGRGGAKRKSFIPLLFFLILLCQHLLTPDLDDVKGGNMEKKY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0402 446 Pfam Replication factor RFC1 C terminal domain 240 307 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lele32g0402 446 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lele32g0402 446 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 240 414 - -
Lele32g0402 446 MobiDBLite consensus disorder prediction 366 387 - -
Lele32g0402 446 MobiDBLite consensus disorder prediction 46 102 - -
Lele32g0402 446 MobiDBLite consensus disorder prediction 337 409 - -
Lele32g0402 446 MobiDBLite consensus disorder prediction 344 362 - -
Lele32g0402 446 MobiDBLite consensus disorder prediction 51 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0402 Lele-ChrLele32 2552744 2556577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0402 241 368 Core DNA Replication Machinery Family AT5G22010 57.812 1.92e-40 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele32g0402 32 2552744 2556577 Lele09g1017 09 19310199 19312434 CCT
Lele32g0402 32 2552744 2556577 Lele11g1023 11 17382968 17385852 CCT
Lele29g0422 29 2591335 2598531 Lele32g0402 32 2552744 2556577 hybridization
Lele30g0987 30 13372392 13375605 Lele32g0402 32 2552744 2556577 hybridization