LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0388	ATGGATGAAATCGAAGTTCCTCAGTATTTCACGTGTCCCATTTCTCTTCAGATCATGAAGGACCCCGTGACAACATTCACCGGCATAACCTACGACAGAGAAAGTATCGAACAATGGTTGCTCAAGGCCAAAGAACCCAAGTGTCCTGTTACCAAGCAGCCATTGCCCAGAGGCTCCGATCTCACTCCCAACCACACCCTCCGGCGTCTCATCCAAGCTTGGTGCTTGGAAAACGCAGCTCACGGCGTCGATCGCATCCCCACCCCTAAATCCCCTCCCTCCAAGACCCTCCTCCAGAAACTTCTCAGAAATCTCGACCTTCCCCATCAGCACCAATCCGCATTGGAGAGATTGCATTCTCTGGCCACAGAAAACCAAAGGAACCTCAAGTGCATGGTAGAATCCGGTGTGGCCGAGTCCATGATTCATCTTATTACGAAAAAGTCCAACGAGTTATGTAACAACACTAATTCTCTCGAACAATCTCTGCGAATTCTACGCCCTCTCTGGAGTACTTGCGACAGCAACATTATCAAGCCTCTGGTCGTCCAAAACATCGACTTCATCAAATCGCTGACTTGGATTCTTCAGCTGCACCTGGACACCAACGTCAATCTGATAAACGAAGCAATGCCCGTGTTAAAATCCACCATCGAACTCGCAGATTCAACCCTTTTAGGAAGTTTGAAACCCGAATTCTTCAGGGAAATCACAAGGGCGCTCAAAAACAGATCAATCTCACAACAAGCCATCAAATCCGCCTTGCATGTTCTCATAGAAACGTGTCCTTTAGGTCGAAACAGAACGAGGATCGTTGAAGCAGGAGTAGTATATGAATTGATCGAGCTTGAGCTAGAGAAACACGAGAAGAACATAACGGAGCTTATATTTAACCTGCTTGCGCAGCTATGTTCGTGTGCGGACGGGAGGGAACAATTCCTGTCACACGCGGCGGGGTTTGCGGTGGTGTCGAAGAGGGTTCTGAGGGTGTCTCCGGCGACAGACGATAGGGCCGTTCACGTGTTGTGGTTGATGGCGAGGTACTCGGGATCAAACGACGACGTATTGGAGATGTTGAGGGTGGGAGCCGTATTGAAGCTTTGCATGGTGATTCAGGCCATTTGTGATCCGAGTTTGAAAGAGAAAGCGAGATCGATTTTGAGATTGCACTCCAATATTTGGAATAATTCTCCTTGTATTCAAGTTTATCAGTTAACCAGGCACCAAAGGTGA	1233	0.4818	MDEIEVPQYFTCPISLQIMKDPVTTFTGITYDRESIEQWLLKAKEPKCPVTKQPLPRGSDLTPNHTLRRLIQAWCLENAAHGVDRIPTPKSPPSKTLLQKLLRNLDLPHQHQSALERLHSLATENQRNLKCMVESGVAESMIHLITKKSNELCNNTNSLEQSLRILRPLWSTCDSNIIKPLVVQNIDFIKSLTWILQLHLDTNVNLINEAMPVLKSTIELADSTLLGSLKPEFFREITRALKNRSISQQAIKSALHVLIETCPLGRNRTRIVEAGVVYELIELELEKHEKNITELIFNLLAQLCSCADGREQFLSHAAGFAVVSKRVLRVSPATDDRAVHVLWLMARYSGSNDDVLEMLRVGAVLKLCMVIQAICDPSLKEKARSILRLHSNIWNNSPCIQVYQLTRHQR	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0388	410	SUPERFAMILY	ARM repeat	72	221	IPR016024	-
	Lele32g0388	410	PANTHER	WDSAM1 PROTEIN	3	401	IPR045185	GO:0061630
	Lele32g0388	410	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
	Lele32g0388	410	SUPERFAMILY	RING/U-box	3	84	-	-
	Lele32g0388	410	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
	Lele32g0388	410	SUPERFAMILY	ARM repeat	229	389	IPR016024	-
	Lele32g0388	410	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	84	IPR013083	-
	Lele32g0388	410	Coils	Coil	278	298	-	-
	Lele32g0388	410	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
	Lele32g0388	410	Gene3D	-	96	392	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0388	Lele-ChrLele32	2433020	2434252	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0388	2	400	U-box Gene Family	AT2G35930	43.069	6.11e-109	325