Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0387 ATGGCTTCCACTTACTTTCATGGCGGGAATTCTGAGATCCAACCCTCTGGGGATGGTTTACAGACGCTTTACCTTATGAATCCAACCTACGTACCTTATTCTGACACTACCTCTCACCACCCCACAACCCCTAACATGCTTCTCTTCAATCCCAACACTTCCCCTTCTGGCAACGCGCTCAACCTTCTCCACGCGCCGCCTCCTTCGCGTGGTCACCACCACCACCACCTACTTGGCGTCATCCCAACTAACATGGTCGGATCCGAAAACTCTGACATCGCTGCCTTCCATGGCTTCGCCGCCACTGCCACCACTGCTGCGCCGCGGGTTCATAACTTGTGGGGTTCCATAATCGATCATCAAACACCGTCATCGCCGGCGCCAGTGTCGGCAACCGAGCCCAGCAGTTCAGGTACGGCGGCTACTGCCGGTTTCAGAAGGCCTAGTCAGCAGCAAGGCTTGTCACTGAGCCTTTCGTCGCAGCATACAGCTTATAACAGGTCGCTTTCTGGTGAGCTCGATGTGCCGGGACAATCCCGAGTTTCTGCTATATCGCCGACGAGTCACGTCGGTGGTGGGAATGATATGCAGATTCTGGGAAACTCTCCGTCGTCGACATCGGTTTCGAACGGAATTTCGAGTATGCAAGGCGTGATTTTGGGGTCTAAATATTTGAAGGCGGCGCAAGAACTTTTGGATGAATTTGTGAATGTGGGGAAGGAGATTGAGAAAAGGGGGTCCATAGAGATCGAAGCGAGCATTGATAAAGAGAAGACGAAAGCGAATAGATCAGAATCGGAATCTGGGAATATTGAAGATGGTTCAAGTGGCGGCAAGCAAGCATCTGAACTCAGCACCGCCCAACGACAAGAGCTTCAGATGAAGAAGTCCAAGCTCGTTTCCATGCTTGATGAGGTGGAACAAAGGTACAGGCAGTACAGGCACCAAATGCAGATAGTGATATCTTGGTTTGAACAAGCAGCAGGATATGGAGCAGCAAAGTCATACACAGCAGTGGCATTAGAGACAATATCGAAGCAATTTCGATGTCTTAAAGATGCAGTGTATTCGCAGATCAAAGCAACGAGCAAGAGCCTGGGCGAAGACGATTGCTTGGGAGCTAAGATACAGGGTTCCAGGCTACGGTACGTGGATCACCATCTCCGGCAACAGCGAGCTCTGCAGCAGCTGGGAATGATACAGCACAACGCTTGGAGGCCTCAGAGAGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTTTTTGAGCACTTCCTTCACCCTTATCCCAAGGACTCCGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGCAGCCAGGTATCAAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTAGAAGAAATGTACTTGGAAGAAACCAAGGAGCAGAACACCGAGTCCAACCCCAATAAGGATAACACTATTAGATCAGCAAAAGAATCAATGAAGGACTCAGATAATAATGATGCAGCAGCGCACGAAGAATCAGGTTCGGTTAATATTAGATCTTCATTTGATCACATTAATAAAGCTCTCCAATCGAAAATAGATCATCATCATCAAACATTCAACAACCAAACCACCACCACTTCCCTACTCGACATCTCAAATAATCCTCTGATGGTTTCAATGGATGTGGAAATGAAGCCCCGGTTCGTTAAAGATGGGTATAACCCGTTATTAAGTGAAGAGGGTTATGGAGGATTCTCAATGCAAGACATCGGAAGGTTTAACGTTAGTAATGTTTCTGAACAGCATTTAGCACCGAGGTTTCATGGCAACGGTGTTTCCCTCACTTTGGGACTCCCTCATAGTGACAACCTTCCTCTCTCTGCCACTCATCATGGATTTCTCTCTCACAATCTACATTTGGGAACCAATAATGCGACTGAGCTTTGTGCCATCAACGCTCCTCCACCTCCCCCACCGCAACAGTCTTCTCATTCCGGCGCCGGCAGTTATGAGAATATTGATATTCAGAACAGGAAGAGCTTTGCTGCTCAGTTGTTGCCGGATTTCGTCACCTGA 2073 0.4843 MASTYFHGGNSEIQPSGDGLQTLYLMNPTYVPYSDTTSHHPTTPNMLLFNPNTSPSGNALNLLHAPPPSRGHHHHHLLGVIPTNMVGSENSDIAAFHGFAATATTAAPRVHNLWGSIIDHQTPSSPAPVSATEPSSSGTAATAGFRRPSQQQGLSLSLSSQHTAYNRSLSGELDVPGQSRVSAISPTSHVGGGNDMQILGNSPSSTSVSNGISSMQGVILGSKYLKAAQELLDEFVNVGKEIEKRGSIEIEASIDKEKTKANRSESESGNIEDGSSGGKQASELSTAQRQELQMKKSKLVSMLDEVEQRYRQYRHQMQIVISWFEQAAGYGAAKSYTAVALETISKQFRCLKDAVYSQIKATSKSLGEDDCLGAKIQGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQNTESNPNKDNTIRSAKESMKDSDNNDAAAHEESGSVNIRSSFDHINKALQSKIDHHHQTFNNQTTTTSLLDISNNPLMVSMDVEMKPRFVKDGYNPLLSEEGYGGFSMQDIGRFNVSNVSEQHLAPRFHGNGVSLTLGLPHSDNLPLSATHHGFLSHNLHLGTNNATELCAINAPPPPPPQQSSHSGAGSYENIDIQNRKSFAAQLLPDFVT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0387 690 CDD homeodomain 405 466 IPR001356 GO:0003677
Lele32g0387 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 492 - -
Lele32g0387 690 Gene3D - 408 487 - -
Lele32g0387 690 MobiDBLite consensus disorder prediction 474 515 - -
Lele32g0387 690 ProSiteProfiles 'Homeobox' domain profile. 402 465 IPR001356 GO:0003677
Lele32g0387 690 SMART HOX_1 405 469 IPR001356 GO:0003677
Lele32g0387 690 FunFam BEL1-like homeodomain protein 9 408 470 - -
Lele32g0387 690 Coils Coil 289 316 - -
Lele32g0387 690 Pfam Associated with HOX 218 355 IPR006563 -
Lele32g0387 690 Pfam Homeobox KN domain 422 461 IPR008422 GO:0003677|GO:0006355
Lele32g0387 690 MobiDBLite consensus disorder prediction 647 669 - -
Lele32g0387 690 MobiDBLite consensus disorder prediction 491 506 - -
Lele32g0387 690 MobiDBLite consensus disorder prediction 256 288 - -
Lele32g0387 690 MobiDBLite consensus disorder prediction 118 206 - -
Lele32g0387 690 SMART prehox3 213 357 IPR006563 -
Lele32g0387 690 MobiDBLite consensus disorder prediction 268 288 - -
Lele32g0387 690 SUPERFAMILY Homeodomain-like 406 471 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0387 Lele-ChrLele32 2420167 2423686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0387 3 689 Homeobox Transcription Factor Family AT2G35940 42.169 5.03e-135 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele32g0387 POX 8.4e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1037 09 19557237 19566928 Lele32g0387 32 2420167 2423686 CCT
Lele10g0989 10 21258600 21274098 Lele32g0387 32 2420167 2423686 CCT
Lele29g0406 29 2472671 2475994 Lele32g0387 32 2420167 2423686 hybridization
Lele30g1005 30 13494812 13499343 Lele32g0387 32 2420167 2423686 hybridization