Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0374 ATGTCGGTGAAGGAATGCGGCCACCACCACCACCAAGACAACCAGCTCGTCCGCCGGGTAATCGCCGGAGTTGGCGCCTTCATTATCCTCATCCTCTTCGTCATCTTCCTAATCTGGGTCATCCTCCGCCCCTCCAAACCTCACTTCATCCTCCAAGACGCCACCCTCTTCGCCTTCAACTTCTCCTCCTCGCCGGCCACCGCTGCCGGCACTGAACCTCCTGCTTTGACCCCCAACACCATCACCATGACCATGCAAGTCACGCTCTTGGCTCGCAACCCCAACGACCGAATCGGGATATACTACCAGAAGCTGACCGCGTACGCGTCGTACAGGAACCAGCAGATCTCGCTGGGCACGGTGCTGCCGGCGACGTACCAGGGACACAAGGACGTGACGGTGTGGTCGCCGTTCTTGTACGGGACGGCGGTGCCGGTGTCGCCGTACGTGTTGCAGTCTCTGACGCAGGATCAGAATGCAGGGGGCGTGCTGGTGAACGTGAAGGTGAACGGAAGGGTGAAGTGGAAGGTCAGCTCTTGGGTGTCCGGCAAGTACCATATCTACATCAACTGTCCGGCCTACATCAGGCTCGCCGGAGACGGGATCGGAGCTGAGGGCCCCGCCATCAGGTATCAGATTATGCAGAGTTGCAGCGTGGATGTTTAG 666 0.5931 MSVKECGHHHHQDNQLVRRVIAGVGAFIILILFVIFLIWVILRPSKPHFILQDATLFAFNFSSSPATAAGTEPPALTPNTITMTMQVTLLARNPNDRIGIYYQKLTAYASYRNQQISLGTVLPATYQGHKDVTVWSPFLYGTAVPVSPYVLQSLTQDQNAGGVLVNVKVNGRVKWKVSSWVSGKYHIYINCPAYIRLAGDGIGAEGPAIRYQIMQSCSVDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0374 221 PANTHER OS05G0367900 PROTEIN 18 219 IPR044839 GO:0098542
Lele32g0374 221 Pfam Late embryogenesis abundant protein 88 191 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0374 Lele-ChrLele32 2328510 2329175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0374 9 191 EF-hand Containing Proteins AT5G21130 20.321 1.29e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1047 11 17758782 17761004 Lele32g0374 32 2328510 2329175 CCT
Lele32g0374 32 2328510 2329175 Lele09g1037 09 19557237 19566928 CCT
Lele32g0374 32 2328510 2329175 Lele10g0989 10 21258600 21274098 CCT
Lele32g0374 32 2328510 2329175 Lele11g1039 11 17576480 17591225 CCT
Lele30g1016 30 13595692 13596357 Lele32g0374 32 2328510 2329175 hybridization