Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0353 ATGGAGATCGGATGGCCAACTAACGTGCGCCATGTTGCGCACGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGACGAATTCGAACCTGAAGTGCCCAGAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTTTGACTCCAGAGGGAACAGTGTGCCAACTATTCTGTTGTTAATCCAAAGACGCCTGTATAGTGAAGGAGGTTTGCAGGCAGAGGGCATATTCAGAATTAACGCAGACAATAGTCAAGAGGAATATGTTAGGGAGCAATTAAACAGGGGTGTGGTCCCTGAAGGGATTGATGTACATTGCTTAGCAGGACTAATCAAGGCTTGGTTTAGGGAACTGCCAATAGGCGTTCTGGATTCCTTATCACCTGAGCAAGTAATGGAAAGCCAAACTGAAGAGGAGTGTGCTGAATTAGCAAGGAATCTACCTCCCACTGAAGCTTCCCTCTTGGACTGGGCAATCAATCTCATGGCTGACGTTGTCCAATATGAACATCTGAATAAGATGAATGCACGCAACATTGCAATGGTTTTTGCCCCAAACATGACTCAGATGGCCGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACTCTGATACTAAGGACGCTGCGTGAAAGAAAGGATTCCATAGTAGAATCTTCACCTGGTTTTTACTTAGAGCCCTCTGGTGTTAATAATAGTCACCATAGCCCTATACAATTCTGCCAGCCAGATTCTGCTAAAGATAATGAAGAGGCTCAGGCCCTAACAACTGAAAAAACTGCCTCAGAAACTAATCGTGCCTCTGATTCCCTCCAAGATACTAGCTTAACTGGAGCAGAATCTGGCAGTTTGGGAACCTCTTCTGAAAACCCAGTATCTAATGAGGATTTGTATTGTGAGTATCCACCTAAAGGAAATGTTGGGAAGAACAAGACAGGGCAATCAAGCAATTCAAATTCAAGAAAGGGATCCAAGAAAACCAGAGACCAACAATCCTCAAACCAAGGAACAACAACTGTTGAGAAAACTAAGCGAACTGGTAAACTGAATCGCATAAATTCAAAATCTGAGAAGGCAGAACCATGGCGGTGA 1140 0.4412 MEIGWPTNVRHVAHVTFDRFNGFLGLPDEFEPEVPRRPPSASATVFGVSTESMQLSFDSRGNSVPTILLLIQRRLYSEGGLQAEGIFRINADNSQEEYVREQLNRGVVPEGIDVHCLAGLIKAWFRELPIGVLDSLSPEQVMESQTEEECAELARNLPPTEASLLDWAINLMADVVQYEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRTLRERKDSIVESSPGFYLEPSGVNNSHHSPIQFCQPDSAKDNEEAQALTTEKTASETNRASDSLQDTSLTGAESGSLGTSSENPVSNEDLYCEYPPKGNVGKNKTGQSSNSNSRKGSKKTRDQQSSNQGTTTVEKTKRTGKLNRINSKSEKAEPWR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0353 379 CDD RhoGAP 65 221 - -
Lele32g0353 379 ProSiteProfiles CRIB domain profile. 3 16 IPR000095 -
Lele32g0353 379 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 -
Lele32g0353 379 Pfam RhoGAP domain 67 199 IPR000198 GO:0007165
Lele32g0353 379 SMART RhoGAP_3 62 225 IPR000198 GO:0007165
Lele32g0353 379 SMART PBD_5 3 37 IPR000095 -
Lele32g0353 379 MobiDBLite consensus disorder prediction 360 379 - -
Lele32g0353 379 MobiDBLite consensus disorder prediction 244 379 - -
Lele32g0353 379 Gene3D CRIB domain 1 33 IPR036936 -
Lele32g0353 379 CDD CRIB 1 41 - -
Lele32g0353 379 MobiDBLite consensus disorder prediction 345 359 - -
Lele32g0353 379 MobiDBLite consensus disorder prediction 271 310 - -
Lele32g0353 379 MobiDBLite consensus disorder prediction 244 259 - -
Lele32g0353 379 FunFam Rho GTPase-activating protein 5 33 226 - -
Lele32g0353 379 Gene3D Rho GTPase activation protein 36 232 IPR008936 -
Lele32g0353 379 PANTHER MKIAA1688 PROTEIN 1 348 IPR044785 GO:0005096
Lele32g0353 379 Pfam P21-Rho-binding domain 2 29 IPR000095 -
Lele32g0353 379 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 233 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0353 Lele-ChrLele32 2210295 2213253 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0260 12 2250237 2250788 Lele32g0353 32 2210295 2213253 CCT
Lele32g0353 32 2210295 2213253 Lele09g1050 09 19760130 19761128 CCT
Lele32g0353 32 2210295 2213253 Lele10g1012 10 21563521 21564522 CCT
Lele32g0353 32 2210295 2213253 Lele11g1051 11 17803482 17804480 CCT
Lele32g0353 32 2210295 2213253 Lele12g0267 12 2293431 2294435 CCT
Lele29g0364 29 2244563 2248432 Lele32g0353 32 2210295 2213253 hybridization
Lele30g1036 30 13714339 13717311 Lele32g0353 32 2210295 2213253 hybridization