Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0346 ATGTACCAACATCACCAACACCAAGGAAAGAACATCCATTCTTCTTCTTCCTCCAGAATGCCAATCTCAGCTGAGAGACACATGTTCCTTCAAACTGGAAATGGTTCTGACGATTCTGGACTTGTCCTCTCCACTGATGCTAAGCCCAGATTGAAATGGACAACAGATCTACATGCCAGGTTTATAGAAGCGGTCAATCAGCTAGGTGGAGCTGACAAGGCAACTCCTAAGACAGTAATGAAACTCATGGGAATTCCAGGGCTTACTTTGTATCATCTAAAGAGCCACCTTCAGAAATATAGATTGAGCAAGAATCTGCATGGACAAACTAACAATGTGACACACAAAATCAGTGCAGCAACAGGAGAAAGACTTCCTGAACCAAGTGGAACTCATATGAGTAATTTAAGCCTCACGCCACAGGCAAACAAAGATCTACACATAAGCGAGGCCCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAACAGCTTGAGGTACAGAGACACTTGCAGCTTCGCATAGAGGCCCAAGGGAAATACCTGCAGTCTGTGCTAGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGTATGGTGGGACTTGAAGCAGCAAAAGTTCAACTCTCAGAGCTTGTGTCCAAAGTATCGTCTCAGTGTTTGAGTTCAGACATTTCAGAACTGAAGGAACTACAAGGATTCTGCCCACAGCAAACACAAAACAACAATCAGCCAACCGACTGCTCAATGGACAGCTGCCTCACATCCTGCGACGGTGGATCTCAAAAGGAACAAGAAATACAAAATCCATCAGGGATGGGCTTAAGATCCTTCAATGCCCATACATTCATGGAAAGAAAGGAATCCATGGAAGCGCCCATCCTGAGGAACTCTGAGCTCAAATGGTGTGATGAAGTGAAAAAGAACGGCACCTTTCTGAGCAACCCTTTGGGCAATAGTACGGAAAGACGAGGTTATGCTTCCGAAAGAAGCGCCGGCGACTTGTCTATGAGCATCGGATTTGAACGAGAAACTGAGAATAATAATGGAAACAGCATGTATCCTGAGAGATTAATGATGGGGAGAGAATCAGATGGTGAATTCCAACACCGAAACACGAGTAAGCCAGAATCGATAAAACCGCTGGAAGAGAAGGTTCCTCAGGAGTATAGATTACCTTACTTCGCAGCATCGAGATTGGACCTGAACACTCGTGAAGAAAACGATGCTGCGATGAGCTGCAAACAGCTGGATTTGAATGGCTTCAGCTGGAGCTGA 1284 0.4517 MYQHHQHQGKNIHSSSSSRMPISAERHMFLQTGNGSDDSGLVLSTDAKPRLKWTTDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQTNNVTHKISAATGERLPEPSGTHMSNLSLTPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLSSDISELKELQGFCPQQTQNNNQPTDCSMDSCLTSCDGGSQKEQEIQNPSGMGLRSFNAHTFMERKESMEAPILRNSELKWCDEVKKNGTFLSNPLGNSTERRGYASERSAGDLSMSIGFERETENNNGNSMYPERLMMGRESDGEFQHRNTSKPESIKPLEEKVPQEYRLPYFAASRLDLNTREENDAAMSCKQLDLNGFSWS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0346 427 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Lele32g0346 427 FunFam Myb family transcription factor 47 105 - -
Lele32g0346 427 Coils Coil 149 169 - -
Lele32g0346 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 285 IPR044848 GO:0003700
Lele32g0346 427 Gene3D - 47 105 - -
Lele32g0346 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Lele32g0346 427 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lele32g0346 427 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Lele32g0346 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0346 Lele-ChrLele32 2170759 2173060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0346 80 427 G2-like Transcription Factor Family AT3G04030 50.997 4.64e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele32g0346 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1062 09 19835665 19838550 Lele32g0346 32 2170759 2173060 CCT
Lele29g0356 29 2208464 2211133 Lele32g0346 32 2170759 2173060 hybridization
Lele30g1045 30 13764212 13766530 Lele32g0346 32 2170759 2173060 hybridization