Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0336 ATGATGAGAGATCGACACTACAATGTACAAGACAAGAATAATCCTTATTTTCAATATGCTTCTCCAACTTTCATAGAATGGCTCAAGCCATCATCATCATCTTCTTCTTCTTCTTCTGATGAGACTTGTTATCAGAACGAGGTCGTTCGGGAGACTATCCAGTTTCTGCCTCCATCGAAAGACTTGGAAGTGGAAAAGGAGGCTGTGTTTGGATCAGTAGTGAAAGAAGAGAAGGTATTGTTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACTCAGAAGACAGTGATCATGGTGGGGCTGATATGAAGAAGAAGGTTAATGATCATGTTAAAGAAGAAGACTATGAAGTAAAAGAGGAAGAAGAAGAAGAAGAAGGCTTGATGATGAGGACGACGAGGAGAAGTTTCCAAGGATTTAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGCCATGGGTCTGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAACCGGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACCCATTACAAGAGAAAGCATGGCTCAAAACCCTTCATGTGCAGAAAATGTGCCAAGACTTTCGCTGTGAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGCTTTGGTATTGCACTTGTGGTTCAGATTTCAAGCATAAAAGGTCCCTTAAGGATCATATTAGGTCCTTCGGAAAGGGCCACAAACCCCATCCTTCTCTTGAAGGTTTCGAAAAGGACTCCGAAGAAGATGAAGCTATTACTACTACTCACACATAA 975 0.4359 MMRDRHYNVQDKNNPYFQYASPTFIEWLKPSSSSSSSSSDETCYQNEVVRETIQFLPPSKDLEVEKEAVFGSVVKEEKVLLEQVGVALHIGLPTNYSEDSDHGGADMKKKVNDHVKEEDYEVKEEEEEEEGLMMRTTRRSFQGFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEAITTTHT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0336 324 Gene3D Classic Zinc Finger 207 296 - -
Lele32g0336 324 FunFam Zinc finger protein WIP2 218 300 - -
Lele32g0336 324 MobiDBLite consensus disorder prediction 298 324 - -
Lele32g0336 324 PANTHER ZINC FINGER PROTEIN WIP2 23 317 IPR043584 GO:0003700|GO:0010468
Lele32g0336 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 302 IPR013087 -
Lele32g0336 324 SMART c2h2final6 165 187 IPR013087 -
Lele32g0336 324 SMART c2h2final6 249 269 IPR013087 -
Lele32g0336 324 SMART c2h2final6 212 244 IPR013087 -
Lele32g0336 324 MobiDBLite consensus disorder prediction 294 324 - -
Lele32g0336 324 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Lele32g0336 324 Gene3D Classic Zinc Finger 164 187 - -
Lele32g0336 324 SUPERFAMILY beta-beta-alpha zinc fingers 161 188 IPR036236 -
Lele32g0336 324 Coils Coil 108 128 - -
Lele32g0336 324 SUPERFAMILY beta-beta-alpha zinc fingers 235 269 IPR036236 -
Lele32g0336 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0336 Lele-ChrLele32 2100170 2102960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0336 17 314 C2H2 Transcription Factor Family AT1G08290 57.817 1.44e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele32g0336 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1070 11 17950104 17954235 Lele32g0336 32 2100170 2102960 CCT
Lele12g0245 12 2163328 2167282 Lele32g0336 32 2100170 2102960 CCT
Lele09g1068 09 19889449 19895931 Lele32g0336 32 2100170 2102960 CCT
Lele29g0351 29 2151639 2154472 Lele32g0336 32 2100170 2102960 hybridization
Lele30g1056 30 13830253 13833099 Lele32g0336 32 2100170 2102960 hybridization