LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0323	ATGGACTTTGAGAATGGATCATCTTCTCCATGCTCAACAAAGAACCCTAATTCAGCTCCTGCATCTCACAAAAGTAAAGCAGGAAGAAAGAAATTTCAGGAGACTCGACATCCGCTCTTTCGAGGTGTCCGGCGAAGGAACGGTAACCGGTGGGTTTGTGAAGTCCGGGAACCGAACAAGAAGTCCAGGATTTGGCTCGGCACTTATCCTAATCCAGAAATGGCGGCTAGGGCACATGACGTGGCTGCCCTAGCTCTCCGAGGCAGCTCGGCTGCTCTCAATTTCCCTGACTCGGCTTGGCTCCTCCCGGCGGCCACCTCATCCTCCGCCCAAGACATCAGAGCAGCCGCGGCCGAAGCCGCCCACTCTTTCAGACCTACCGCTTCTTCTTCCTCAGTTGAAGTAGACAAGGAAAAGAACAACGAAGTTGATGACTGTAGAAGGTCGTTCTTGGACGAGGAGGCATTGTATAATATGCCGAGTCTGTTAGATCACATGGCCGAGGGTTTACTTCTCAGCCCCCCTTCTATCTGCTGGAGGGCCTTAGGTTTAGGTTTCGACGATGAGTACTCCACTTGTCATCCAATAGACTTGACTTTATGGCGACACGACTGA	615	0.5187	MDFENGSSSPCSTKNPNSAPASHKSKAGRKKFQETRHPLFRGVRRRNGNRWVCEVREPNKKSRIWLGTYPNPEMAARAHDVAALALRGSSAALNFPDSAWLLPAATSSSAQDIRAAAAEAAHSFRPTASSSSVEVDKEKNNEVDDCRRSFLDEEALYNMPSLLDHMAEGLLLSPPSICWRALGLGFDDEYSTCHPIDLTLWRHD	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0323	204	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	16	201	IPR045277	GO:0003700
	Lele32g0323	204	SUPERFAMILY	DNA-binding domain	39	98	IPR016177	GO:0003677
	Lele32g0323	204	Pfam	AP2 domain	38	88	IPR001471	GO:0003700\|GO:0006355
	Lele32g0323	204	PRINTS	Ethylene responsive element binding protein signature	78	98	IPR001471	GO:0003700\|GO:0006355
	Lele32g0323	204	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Lele32g0323	204	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Lele32g0323	204	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Lele32g0323	204	MobiDBLite	consensus disorder prediction	1	37	-	-
	Lele32g0323	204	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele32g0323	204	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Lele32g0323	204	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Lele32g0323	204	CDD	AP2	51	98	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0323	Lele-ChrLele32	2007283	2007897	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0323	8	179	AP2-EREBP Transcription Factor Family	AT5G51990	50.811	1.60e-58	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele32g0323		AP2	9.4e-14	CL0081