Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0311 ATGTTTACCCGACGCCGTGGCGTTGAGGTCAAGGCTGGGGCACCTGTTGAAGTAGACCCAGATGAGTCTGGTAAATGCATACACCTGTCTCAGGCTGCTATTGGAGAGGCAAAGAATAAATCAAGTGAACCTGTGATCATTTATCTGAAGTTTGGTGGCCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAGAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTGTGGTTACAAGGCGGAATTACCAGGATATCCTTTGCAGTTGTATCAACTTGTTGCCAACTTATTTTTCACGGAGATGGATGAGGACGAGGACTTGACTGACAGTGAGGATGATGAGGATATGGCAGTCATTGCCAAAGATAATGCAAAACCTGATATAAAGCCTGAAGTAGCAAAGGCTGCTGCATCTAAAAGTAATGATGTCAAGCCTGCTGATTCGAAAAAGCAAATCAAGGTTGTGGATCCAAAGAAAGAAGATGACTCAGATGACGAAGAGGATGATGAATCAGATGATGAAGATGACAGTTCTGATGAGGATATGTTGGGTGGTGAAGTTGATGGTAGTGATGAGAGTGAGAGTGATGAAGATGATGATGAAACCCCTTGTAAAAAGGTTGATCTGGCTAATAAGAGGCCTAATGAATCTGCATTGAAAACTCCTGTTGCTGCTAAGAAAGCAAAATCTGCTACCCCTCAAAAGACTGGTGCCTTGGGGAGCACCTCAAGTCCCTATCAAGTTGGAAAGCATTTAAAAGGACTGACTGGCGGGAGGTGTCTTTTGCCTAAGTGTGTTGCAGATGGTAAGAAAGGCGGTCATGTAGCAACTCCTCATCCACTAAAGAAGGATGGAAAGACTCCTAAAAGCGAAACTCCGAAATCCGGCGGACAGTTTACCTGCAAATCATGTAGCAAGACTTTTAACTCAGAAGGGGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTCAGTGA 1029 0.4363 MFTRRRGVEVKAGAPVEVDPDESGKCIHLSQAAIGEAKNKSSEPVIIYLKFGGQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKNGSVYFCGYKAELPGYPLQLYQLVANLFFTEMDEDEDLTDSEDDEDMAVIAKDNAKPDIKPEVAKAAASKSNDVKPADSKKQIKVVDPKKEDDSDDEEDDESDDEDDSSDEDMLGGEVDGSDESESDEDDDETPCKKVDLANKRPNESALKTPVAAKKAKSATPQKTGALGSTSSPYQVGKHLKGLTGGRCLLPKCVADGKKGGHVATPHPLKKDGKTPKSETPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGGQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0311 342 MobiDBLite consensus disorder prediction 251 266 - -
Lele32g0311 342 Gene3D Classic Zinc Finger 314 342 - -
Lele32g0311 342 MobiDBLite consensus disorder prediction 292 307 - -
Lele32g0311 342 ProSitePatterns Zinc finger C2H2 type domain signature. 318 339 IPR013087 -
Lele32g0311 342 MobiDBLite consensus disorder prediction 146 267 - -
Lele32g0311 342 SMART c2h2final6 316 339 IPR013087 -
Lele32g0311 342 FunFam Histone deacetylase HDT1 3 101 - -
Lele32g0311 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 342 IPR013087 -
Lele32g0311 342 Gene3D Nucleoplasmin core domain 2 99 - -
Lele32g0311 342 MobiDBLite consensus disorder prediction 160 177 - -
Lele32g0311 342 MobiDBLite consensus disorder prediction 178 216 - -
Lele32g0311 342 Pfam Nucleoplasmin-like domain 7 95 IPR041232 -
Lele32g0311 342 MobiDBLite consensus disorder prediction 285 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0311 Lele-ChrLele32 1932031 1934983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0311 7 98 C2H2 Transcription Factor Family AT5G03740 55.435 4.14e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele32g0311 NPL 1.2e-09 CL0055