Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0304 ATGGAGACCCCTGTCGTCAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAAAATGGAACGGATGATGGGAGATCGGTTCCCGATTTAAAAAGGCAAGCTGTTGGGACAAGAAGACCGATAGCACTGGTTGGGCGATATATACTTAAAGAGTTTAAGGGAAGTGGGGTCTTTCTGGGGAAAGTTGTTTATTACGAGTGTGGTTTATATAGAGTAAATTACGATGATGGTGATTATGAGGATTTAGATAGTAGCGAGATTCGTGGAATGCTTCTCAACGAGTGTGATCTTGATGATGAGTTGACTAGAAGGAGGAATGAATTAGATCAATTGGTGCTGAAGTATAGTGCCAAGAGAATAGATGGCACGGAGAATAGTTCTGCTGACTTGAGCAAATATGTCCTCGGGCTTGAGGCCCCTGCGTCAAGTAAATTGCCTGGTGGGTTATTGATTGAACACGACGGGGTAGATGCTGAGGAGGATGCTCATTCACCAAGCGACGAAAGAGATTCCGCGTCTGATGAAGAGATACCTTCTCTTCCTCCTCCATTGCAGTTGCCACCGTCTTCAGGGACTATTGGGGTGCCAGAGCCATATGTCTCTCATCTTCTTGCAGTCTACGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTGAGTCCGTTTTCTTTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCAAATACTTTGTTGGATTCCATTCATGTTTCACTGATGCGTGCATTGAGGCGTCACCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTATGGATACAGAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGACGTTTTGGAGTCTGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGATTATAATGCTCAAGATATCCTTCCAGAAGAAAATTGGTCTAGATTCCATCCAAGAAATGCTAAAAATGCTTGCAAGGATAAAGAAGCCGCAAAGCTTGTTTTGGAATCTAATGCTATGAAGCCACCTGGTAACTCTGTTATAGATTTCAGAGACACTAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTATGTGCCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATACCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGTCATGACTCACTGTCAACAGTGAGCTTTGTCTCAGATATTACAACCAGAATGACATCTCAAAAGTTCTCCAAGCGCTTTACGCTTCAGTAGACCACAGGCCCCTATATTATGGAATTTGTATGGCTGTGTTACAGTATTGGAATATTCCAGGAAGTATCCTGCCTGTATCTGTTAGAACTGGAACAGATGTTAACAATTCAAGGACAGAGGAAGATGCAAAGTTCTCTAGTTTATCAACCACTCCTTTGGGTGAAGAAGAGCACACAACTGTTAATTCAGTGAAGGCAGAATACACTGTAACCAGTGATATTGTAATTCATGGTAATTACATGGCTCCATCTGACTCATTGGTTACCACTACTAGAGAGGCCTGTGCTTTTGAAAGCAGCAATGACGATAGAACTAGAGAGTGCTTTACCATGAATACTATGTTTCCTAAAGAGACTAGAATAGAGTCTGTCATCTCTGGTGGTACAGGTGGTCATCAGCGCAGTCCCTTTGTTATGACCAACAATCATGGACATGCAAATGATAAGCAGTTGCCTTTTACTCCATCCTTGCAACGTAAAGAAGGCAACCAAGCTAGCTCTGAAAGGGTTGAATATAATTCAACTAAGGATCTTGTATACACGGGTTTTTCTTTTAAGCCTCAGTCTTACGTTAATCACTATACGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAGTTGGCTATTCTTTCTTCTGAGGATTCTAGGTCAGAGGGTCATGTTTCAGATAATTTGAGGAAATTTACAGCTGAAAGTGCTTCTTTGCAAGCAAAAGCATTCTCAATGACAGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCCGCCCTGAGTGCCACCAAAAGTGCTATCAAAGTTTTAAGTGGTCTTTCCACTGTAAGGGGTGGAGAGGGAATTCTTCCAAGCATTGCGACATATATCATGTATTTGGAGGAAAGTTTACACGGTTTAGTAGTTGGGCCTTTTCTAAATGCAAATTACAGAAAGCAATGGCGTAAACGAGTTGAACAAGCTAAAACATTTAAAGCTATAAAGCCTCCTTTGCTTGAACTTGAGGAAAACATTCGCATAATTTCTTTTGCCGGTGAGTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTGTTATTCAAGGATCTACAAGTTCTGTTGGAACAATACAGACACGTGCACCAAATGGAAGGCGCTGCAAGAAACAATCGGCTATTGATGAAGTTACAGCTGATGTTTCTCATGAAAACAGCTTTGACTGGTGGTATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCGGTTTTGCCAAAATCTGTGGTCAGGAAAGCTGCTCGTCAAGGTGGGCGGAAGAAAATTTCTGGTATTTCCTATGTTGATGGCTGTGAAATCCCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCGGTACAAATGAGTCGGAATGCATCACAGCTTGCACTTCAGGTCAGATACCTTGATTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAGGGTCAAGAGACTGAATCTTCTGCATTCAGAAATGCTAACATATGTGATAAGAAAGAAGTGAGGGGAAAACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTAGAGCAAGGTCAAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGCGTTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTATAGAAAAAATGCCATCTCATCAAGAGAACATGAAGTTGGAACCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTATCTGCAAGAGAGACAACTGGGATATATTTTCATGTGCTGTATGTCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTCTAATTTCAACGTTCTCTACAAACAAGGAGGTTGAGTTCTTAACCACATGCAAGCACTGTTATGCCAAATTGCTTGCTCAAAAAAGGACCAGTGACGAATCTCCAACTAGTCCCTTAGTCTTGCGAGGACAAGAACATAGTTCTGTGACTGTTTTGAAGGGATCAAGACCTAAATGTTATGATCAAGCATTGAAATCTACAAGTATCAAGAATACTCGTCCTGACATGAAACAGGGCACTCCTAATTCCTCTCTGGCAACGAAAAGCCGTCCCAGGAATTGTTCGTGGGGTATTATATGGAATAAGAAGAGTGGTGAGGATGCAGGCATTGATTTTTGGCTTAAAAACATACTTCTAAAGGGAGGTTCGAGTACACCTCAATTACAACCTGTCTGTCACTTGTGCCGTATGCCATATCGGTCTGATCTGGTGTATGTTTGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCTCTTGAGCTAGAAGAGTCAAAAATTTTTGAAGTGTCAGGCTTTAAATGCTGCAAGTGTCGCAGGATCAAATCTCCACAGTGTCCTTACTCTGATAAGAAGCCGAAGATGCAGGAGGGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAATTCTCGCACAGACAATTTTGGAGTTATTTCTGAACCAAAAGAGCATGAGCCTGGTACCCCTAACTTTCCTATAGGAGATGATGGATCGAGACAAAATGACCCTCTGCTTTACTCTCTTTCAAGTGCCGAGCTGATAATAGACCCTAATGCAGAAGCGGATGGTGAGAGGAATGCTGTCTCTTGTCCAGGGGTAAGGAAACTACCAGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGTTGAGATTTTAACACAAAATGGAACAGGTAGTCCGTCAGCTGCAGGGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTTTGCCTAGATAGTAATCTGCTGAATGACTGTGGAAGTGAAAATTACGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAATCAGTTTGAGGGAGCTGATGGATCTGAGGACTTGTCTGGGTACTTGGACAATGTTTCTGCCACGAATATGGATGACATTCGTGACGAATCTGGAGTTCTTAGTTTAGTTGATAAACCAGAACCTGCAGCTTGTTTACCAGGCAGTGGTTATCATTGTTGCCAATGCTTGCAGATGGAACCAGCTCCTGATCTTTCTTGTGAGATATGTGGGCTTGGGATTCACAGCCAATGTTCACCCTGGGTTGAATCACCTAGATTAGGAAGCTCAAGCTGGAAGTGTGGTAGTTGTAGGGAATGGAAAATGCATTACGTAACCCTTTTGGTGGTGTTTAGAAACTTAGCTTTCGCCACACTTGAGATTTATAATGGGACGTGGTTAAGGATTGATGAAAACATTGCCTCAGCTGTAACCGTGGCCTCATGCAAATTTTCAGTTGCCAACTCAAATTTGAAAGTTCATGGATAA 5028 0.4202 METPVVRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAVGTRRPIALVGRYILKEFKGSGVFLGKVVYYECGLYRVNYDDGDYEDLDSSEIRGMLLNECDLDDELTRRRNELDQLVLKYSAKRIDGTENSSADLSKYVLGLEAPASSKLPGGLLIEHDGVDAEEDAHSPSDERDSASDEEIPSLPPPLQLPPSSGTIGVPEPYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLLDSIHVSLMRALRRHLETLSSEGSEHASKCLRCNDWGLLDALTWPVFVIQYLAIYGYRKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLESEEMKAEMGIREELEVGMDYNAQDILPEENWSRFHPRNAKNACKDKEAAKLVLESNAMKPPGNSVIDFRDTRRTEDADVDRNGDECRLCAMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGSXLTVNSELCLRYYNQNDISKVLQALYASVDHRPLYYGICMAVLQYWNIPGSILPVSVRTGTDVNNSRTEEDAKFSSLSTTPLGEEEHTTVNSVKAEYTVTSDIVIHGNYMAPSDSLVTTTREACAFESSNDDRTRECFTMNTMFPKETRIESVISGGTGGHQRSPFVMTNNHGHANDKQLPFTPSLQRKEGNQASSERVEYNSTKDLVYTGFSFKPQSYVNHYTHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSTVRGGEGILPSIATYIMYLEESLHGLVVGPFLNANYRKQWRKRVEQAKTFKAIKPPLLELEENIRIISFAGEWVKLMDDWLVESSVIQGSTSSVGTIQTRAPNGRRCKKQSAIDEVTADVSHENSFDWWYGGKSMKILFLKAVLPKSVVRKAARQGGRKKISGISYVDGCEIPKRSRQIVWRAAVQMSRNASQLALQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVRGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEEGIEKMPSHQENMKLEPQLQRRRLKAACKDIFFYLICKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSLISTFSTNKEVEFLTTCKHCYAKLLAQKRTSDESPTSPLVLRGQEHSSVTVLKGSRPKCYDQALKSTSIKNTRPDMKQGTPNSSLATKSRPRNCSWGIIWNKKSGEDAGIDFWLKNILLKGGSSTPQLQPVCHLCRMPYRSDLVYVCCETCKNWYHADALELEESKIFEVSGFKCCKCRRIKSPQCPYSDKKPKMQEGTKKHRRPSKKDNSRTDNFGVISEPKEHEPGTPNFPIGDDGSRQNDPLLYSLSSAELIIDPNAEADGERNAVSCPGVRKLPVRRHVKHEGDGDESFGTKLSQVEILTQNGTGSPSAAGKASSPVEYDPAVCLDSNLLNDCGSENYEFMDFEPHTYFSVTELLQPDDNQFEGADGSEDLSGYLDNVSATNMDDIRDESGVLSLVDKPEPAACLPGSGYHCCQCLQMEPAPDLSCEICGLGIHSQCSPWVESPRLGSSSWKCGSCREWKMHYVTLLVVFRNLAFATLEIYNGTWLRIDENIASAVTVASCKFSVANSNLKVHG 1675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0304 1675 PANTHER PHD FINGER FAMILY PROTEIN 466 1387 - -
Lele32g0304 1675 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 1 32 - -
Lele32g0304 1675 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Lele32g0304 1675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 483 IPR013083 -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 158 178 - -
Lele32g0304 1675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1277 1353 IPR013083 -
Lele32g0304 1675 CDD PHD_SF 1288 1335 - -
Lele32g0304 1675 CDD PHD_SF 1129 1177 - -
Lele32g0304 1675 Pfam DDT domain 203 257 IPR018501 -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 614 653 - -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 1346 1400 - -
Lele32g0304 1675 SUPERFAMILY FYVE/PHD zinc finger 1284 1342 IPR011011 -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 15 32 - -
Lele32g0304 1675 SMART PHD_3 1129 1178 IPR001965 -
Lele32g0304 1675 SMART PHD_3 1288 1336 IPR001965 -
Lele32g0304 1675 SMART PHD_3 423 472 IPR001965 -
Lele32g0304 1675 SMART PHD_3 1572 1618 IPR001965 -
Lele32g0304 1675 SMART testlast3 200 260 IPR018501 -
Lele32g0304 1675 SUPERFAMILY FYVE/PHD zinc finger 394 458 IPR011011 -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 612 653 - -
Lele32g0304 1675 MobiDBLite consensus disorder prediction 158 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0304 Lele-ChrLele32 1892451 1900004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0304 290 1620 EF-hand Containing Proteins AT5G22760 42.113 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele32g0304 DDT 6.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0317 29 1914181 1920900 Lele32g0304 32 1892451 1900004 hybridization
Lele30g1088 30 14041948 14048628 Lele32g0304 32 1892451 1900004 hybridization