Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0299 ATGGAGAAGGATCGGAACGGCGATAGCAACGAGGCAAGTGATTATAGTTCGGAGGACGAAGGGACCGAGGACTACAGACGAGGAGGTTATTACGCCGTTCGAATTGGCGACACTTTCAAAAATGGGTGCTATGTGGTCCAAAGCAAACTCGGCTGGGGTCATTTTTCTACTGTGTGGCTCGCTTGGGATATCCAGAAATCGCGTTATGTAGCCCTCAAAATTCAAAAGAGTGCCCAGCACTATACCGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCTGAAGGGGACCTGGATGACAAGAAATGCACCGTCAAGCTTTTGGATCACTTTAAGCATTCAGGACCCAATGGCCAGCATGTGTGTATGGTTTTTGAATTCTTGGGTGACAATCTTCTGACCGTTATAAAGTATAGTGATTACCGAGGGATTCCTATCTTGATGGTTAAGGAAATTTGTTTCCATATTCTGGTGGGATTGGATTACCTGCATCGTGAGCTATCTATAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTTTGTCATTGATAGATCCATCTAAAGATCCTAGAAAATCAGGTGCTCCACTTATCCTTCCAAACACCAAGGATAAGACCATTTCAAAAAATGGCGCCACAAAAGACAGTAGTAGTTCAAAAGGGGATCTGACCAGGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGTTGTGTTGAGGAGAGTCTCAAGGAAGGTGAGGAGGATTCTAAACCACCTGAAGTAAAAGATTGTGGTGATGATGTAAAACAGATTGTGGAATCTGTTGAAGATAAACCTTGTAGTCTTGTAATCAAAGGTGAATCGATGGAAGTTGTTGAAGCCAAGGACATCCCAAATGGTAGTCATGGTCAACTGAAAGTTAGTCGTTCCATGAAAAAGAAGTTGCTTGATGATGTTGATCTTAAATGCAAGCTAGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACGAACGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTCGGATGCAAATATTCAACTCCGGCTGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTTCCACAGGTGACGTTCTTTTTGATCCCCACAGTGGTGACAACTATTCAAGGGATGAGGATCATTTGGCATTGATGATGGAACTTCTTGGAACGATGCCTCGCAAGATTGCTCTAGGCGGTCGATATTCTCGAGAGTTCTTTAATAGATATGGCGATTTAAGGCACATCCGCCGGTTGCGTTTCTGGCCTCTGAACAAGGTGCTCAGGGAGAAGTATGATTTTAGCGAGCAAGATGCGAATGACATGGCTGACTTCCTTGTTCCCTTACTCGATTTTGCCCCCGAAAAGAGGCCAACGGCTGCTCAGTGCCTTAATCATCCATGGATCTCCGCAGGTCCTCGGACTCTTGAGCCCTCAGTGACTAGTGTCCAATCTGAGGCCACAGACAAGGAAATGTTTGAAAAGATGAAGGAAAAGGCTGAGTTGGACACAGTTGAAGTTGGTATGCAGAATATAACCATTGATGGATCTGTAAAGGCATTCAAAGATTCACAGGCTACATAG 1629 0.434 MEKDRNGDSNEASDYSSEDEGTEDYRRGGYYAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDIQKSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCTVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTVIKYSDYRGIPILMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPSKDPRKSGAPLILPNTKDKTISKNGATKDSSSSKGDLTRNQKKKLRKKAKKAAQSCVEESLKEGEEDSKPPEVKDCGDDVKQIVESVEDKPCSLVIKGESMEVVEAKDIPNGSHGQLKVSRSMKKKLLDDVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGCKYSTPADLWSFACICFELSTGDVLFDPHSGDNYSRDEDHLALMMELLGTMPRKIALGGRYSREFFNRYGDLRHIRRLRFWPLNKVLREKYDFSEQDANDMADFLVPLLDFAPEKRPTAAQCLNHPWISAGPRTLEPSVTSVQSEATDKEMFEKMKEKAELDTVEVGMQNITIDGSVKAFKDSQAT 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0299 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele32g0299 542 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Lele32g0299 542 MobiDBLite consensus disorder prediction 1 23 - -
Lele32g0299 542 MobiDBLite consensus disorder prediction 206 223 - -
Lele32g0299 542 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 9 501 - -
Lele32g0299 542 MobiDBLite consensus disorder prediction 195 233 - -
Lele32g0299 542 Gene3D Transferase(Phosphotransferase) domain 1 127 485 - -
Lele32g0299 542 ProSiteProfiles Protein kinase domain profile. 44 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0299 542 SUPERFAMILY Protein kinase-like (PK-like) 39 493 IPR011009 -
Lele32g0299 542 MobiDBLite consensus disorder prediction 245 265 - -
Lele32g0299 542 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele32g0299 542 CDD STKc_SRPK 33 484 - -
Lele32g0299 542 SMART serkin_6 44 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0299 542 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele32g0299 542 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0299 542 Pfam Protein kinase domain 320 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele32g0299 542 FunFam Serine/threonine-protein kinase SRPK-like protein 314 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0299 Lele-ChrLele32 1867474 1870803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0299 1 532 EF-hand Containing Proteins AT5G22840 67.468 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele32g0299 Pkinase 8.3e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1108 11 18353208 18365751 Lele32g0299 32 1867474 1870803 CCT
Lele12g0212 12 1747038 1759260 Lele32g0299 32 1867474 1870803 CCT
Lele09g1108 09 20258469 20260839 Lele32g0299 32 1867474 1870803 CCT
Lele10g1076 10 22116462 22121405 Lele32g0299 32 1867474 1870803 CCT
Lele29g0314 29 1897110 1900429 Lele32g0299 32 1867474 1870803 hybridization
Lele30g1094 30 14072131 14075434 Lele32g0299 32 1867474 1870803 hybridization