Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0288 ATGGCTATTGTTGGTGTGCACAATGTGTCAGTGCTTGACTCTTCTTTCCTTAGGGACTCTCATTCTCAATCATCGAGTAGGCGTGGAGATGGAGGCAGGGGAAGCACCAAGTCATCTTCACTTTCTCAACTATGGCAAGAGATTGAGGATGAACATATTCAAGGATCTCATCATGATAAGCCAGAGGAGTTAAACAATTCTGGTTGTGAAAACTCTTCTGATCTCGGAGATCTTGAGAGGGAAAGAGTAAGGAAAATTTTCAGAGAATGGATGAATAGTGGCGCTAGAGATGAAGAATCCAGCATTTCCATCAGAAATAACAGTCCCAGGGACGAGTGGCTTGGTGAAACAGAGCAAGAGAGGGTGAGAATTATAAGGGAGTGGGTTCAAATGAGTAGCCAGCAGCAGAACGGTGTTTCTTCTGATGAAAGTAGAGAGGAGCAATCTGCAGAAATTGAACGTGTTCGTAATGGATTAGTTATAAATAAAAATGAAGGGCAGAGTGAGCAAACTCGTAGAGGGATTCGAAAATTATGTGGCAGACAAGTTTTGCTTGATATGCTAAACAAGGTCGAGAGAGAAAGGCAGAGAGAAGTTCAGGAATTGTTGGACCATCGAGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCATTGCTAAGAGGCAGGTTTCTGAGAAATGATAGAGTTGCTGATAAGAAAAGGACCACTTCTGTGCCCGACAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTTTCAGGTTTAAGGGAAGGATTCTTCTCTAGAACGAACATTTCTTGTTGCAGTTTAGCAAGCAACAATTTACCTGATACCTCATCAAACAGCGATATTGATGAAGCCAGCAGTTCACAGCGTTCCTCAAATGTACATTCCAGACAATCTGGGCCCAATTATCCAGGAACTGATGCAACTCAAATATCTGGTGCTCAGATTTGTCTGCAGAGACCTGCACTTGAGAAATTAGAATTGCAGCAAGACTCTCCTGCTCATGTTGAAGCAGAGGAACCACAGGATTCGAAAATTGAATCAAGAGATTTACTAGAGTCATCAATCAATGTTGGTATCGAAACAAGAGATGAATCACCACAAAGTGTTTATGTGGCGTCAACAGAAGATTCTTCTAAGGAACTTTCCCAACCAGGTTTGCCAAGTGAATATACAGAGCATTGCTCTATGCAGGTATTCAGTGAGGACCATAACGAGCAGTCTGATCATGGATATTATTCAGAGGGAAATATAATCGATGACGATAACTTGATTGAGCCTGTTGCCCTAGAAAGAGAGCTGTCCATAGATTTTAGAAATGATGAAAGTGAAAATCTTCTGCTTGATGCTGAACAGAGAGACAGCCCTGAGGGAAGTATGGATCTTAATCATCCAACTTCTACAGCAAATGAGAGGGCCCAAGACACGTTGCAGAACGAAGATGGAGAAGACTCTCATGTTCAAGAAGCATCTGAATTGCGGCCACTAGATGATGACGCTCAAGAACGGGTTGAAAATGTTTCTGATCATGAAGGTTCTTCTACAGTTGGCGCAACTCATGTAATGTATTTTTCTGATGATGACAGTGCGCATAGTGGAGAACTCGGTGAACTGTTAAATAGGAGACGAGTTTCTAATCTCCTTAGCAGCAGTTTCCGAGAGAATCTGGATCAGTTGGTACGATCGTACGTTGAAAGGCAGAATGAAGCTCAAATGGAGTGGGAGCTGCAAGAGGAAGAAGACTACCTGGAGCAGCATGCTATGGATCACCAGATTGGTGCTCAAGATGGTCCTTCTAACAGTCCCGTTTACTTGCCCTCATCGCCAACTCAATCTTCTCGACCTTCTTGGGACCAACAGTCACATGACGATAATTGGCCACAGAATGACACGAATAATAAACATACTGGAGTTGAGTGGGAGATTATAAATGGTTTGAGGATTGACATGTCTGTGCTACAGCAGAGGATGAAGAAAATGCAGAGAATGCTAGAGGCCTGCCTGGATATGCAGCTTGAGCTGCAGCGCTCATTGAAACTAGAAGTTTCTGCTGCACTTCTTAATTGCTCGCACGATGGCTCAACGAGATTGCAAGATGATAATGAAAACTCCAAGTGGGAGTGTGCGAGGAAAGGACTCTGCTGTATATGCTGTGAAAGCAATATTGATTCTCTATTGTACAGATGTGGGCATATGTGTGTGTGTTCAAAATGTGCGAATGAATTGTTGCAGAGTAAGAGAAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAGGTTATACATGCTTATTCCATACTATAA 2313 0.4302 MAIVGVHNVSVLDSSFLRDSHSQSSSRRGDGGRGSTKSSSLSQLWQEIEDEHIQGSHHDKPEELNNSGCENSSDLGDLERERVRKIFREWMNSGARDEESSISIRNNSPRDEWLGETEQERVRIIREWVQMSSQQQNGVSSDESREEQSAEIERVRNGLVINKNEGQSEQTRRGIRKLCGRQVLLDMLNKVERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTTSVPDSELGLLRQKQTVSGLREGFFSRTNISCCSLASNNLPDTSSNSDIDEASSSQRSSNVHSRQSGPNYPGTDATQISGAQICLQRPALEKLELQQDSPAHVEAEEPQDSKIESRDLLESSINVGIETRDESPQSVYVASTEDSSKELSQPGLPSEYTEHCSMQVFSEDHNEQSDHGYYSEGNIIDDDNLIEPVALERELSIDFRNDESENLLLDAEQRDSPEGSMDLNHPTSTANERAQDTLQNEDGEDSHVQEASELRPLDDDAQERVENVSDHEGSSTVGATHVMYFSDDDSAHSGELGELLNRRRVSNLLSSSFRENLDQLVRSYVERQNEAQMEWELQEEEDYLEQHAMDHQIGAQDGPSNSPVYLPSSPTQSSRPSWDQQSHDDNWPQNDTNNKHTGVEWEIINGLRIDMSVLQQRMKKMQRMLEACLDMQLELQRSLKLEVSAALLNCSHDGSTRLQDDNENSKWECARKGLCCICCESNIDSLLYRCGHMCVCSKCANELLQSKRKCPMCQAPVVEVIHAYSIL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0288 770 MobiDBLite consensus disorder prediction 50 65 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 17 49 - -
Lele32g0288 770 SUPERFAMILY RING/U-box 717 763 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 17 76 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 276 313 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 366 394 - -
Lele32g0288 770 ProSiteProfiles Zinc finger RING-type profile. 718 757 IPR001841 -
Lele32g0288 770 Coils Coil 181 201 - -
Lele32g0288 770 CDD mRING-HC-C3HC5_NEU1 718 756 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 480 513 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 455 517 - -
Lele32g0288 770 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 770 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 598 637 - -
Lele32g0288 770 Coils Coil 647 667 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 334 354 - -
Lele32g0288 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 768 IPR013083 -
Lele32g0288 770 MobiDBLite consensus disorder prediction 463 479 - -
Lele32g0288 770 MobiDBLite consensus disorder prediction 596 637 - -
Lele32g0288 770 Pfam Zinc finger, C3HC4 type (RING finger) 715 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0288 Lele-ChrLele32 1803167 1806308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0288 718 764 C3H Transcription Factor Family AT3G06140 40.426 2.15e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0204 12 1639357 1642151 Lele32g0288 32 1803167 1806308 CCT
Lele10g1088 10 22279144 22281926 Lele32g0288 32 1803167 1806308 CCT
Lele29g0309 29 1839867 1845836 Lele32g0288 32 1803167 1806308 hybridization
Lele30g1105 30 14134544 14138537 Lele32g0288 32 1803167 1806308 hybridization