Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0286 ATGGCGAACGGTAAGGATTCCGACGAGTTCCGGGTGTTATCGAGGGTCCGGACGGGGCTGAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGATCCCTTGGACGGACCCGTGCCAGCAAAATAAAGAATGGGGTTCAAGATAGTCCCAGCAACAAGAGGTCCAAGAAATCTAGGGATAAGAAAGATGAACATAATAGTGCGAAGCCGTTGCCGGATGATGTTATCGAACCCATTGTTTTGGAAGAGTTCAAGGGAAAGGAGGTAAACGCTATAGAAGATATCGATGATGTTATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATCTATCGGGTGACGACGAACCCAAGAACTTAGTGAGTGAGTCGATGGGCAAGAGGGAACCCATGGATGAGGCCTCAGTGCCCATTTGTGATGTGGAGCCCAAGGGCGATGATGTAGAAACTGTAAGCGACAATGAGCCGAAAAGTATTCCAATGTTAGAATCACAGCAGGAAGCAGCAATGGATGATATAGCGCCACCCACTTGCCAACCCGAGTCCAAGGAACATCAAACAAATGAAGATGATTTACAGAAGTCTTTAACGACTGAGAACTTGAGCGGGGGAGAGACATGTTCTCCAGAGGAAAAGGGTTTTATTGTGACTACCCCTGTTTCGCTTAATGGTGACAATAAGGTGAAGGCAATGATAGGGGGGCCACCGAGGCGGTTTACGCGGTCGGCTCTGAAACAACAGCAAGATGATTCGAAGCTCTCAAATTATGGGAAAGAAGCTTGTGATAGAGCCATTGGATTTGTTGATGTTAAGAGGGAAAGTGAGGATGCTTCATTGATCGCTACGCCAACTCAAACAAAAGTGTCAAAGAATAGTGCCTCGAAAAAGTTCCCAACTAAGCTAAAGGACCTTCTAGCCACGGGGATTCTTGAAGGACTACCTGTCAATTATGTTCGGGGAGGGAAGGCACGAAGGGCTGGAGAATCAGGGCTCCGAGGAGAGATTAGGCGCTCAGGGATTTTGTGCTATTGCGAAGTTTGTAACGGGGTTGAGGTTGTATCACCCACCGTGTTTGAGCTGCATGCTGGTAGTTCAAACAAACGACCTCCAGAGTACATATACCTGGAGAATGGGAATACGCTCCGTGATGTCATGAATACATGTTCGAGCATTGCAATAGATGCTTTGGAGGAAGCAGTACAGAAAATCCTTGGGGACTTCACCTTTAAGAAATCTGCCATCTGTTTGAATTGCAGAGTGGCCATATCTCAAGCTGGCAAGGGATGGTCAAGACTACTCTGCGATACTTGCGTGGTTTTAGAAGAGTCTCAACCTACCCCTATTCAAATAGCTGAGGCTAGCAATTCCTGTTCGTCACCTGCAGTTACTCTCAGGTCTCCAGAACCAGTTGTTGTTCCATCGACATTAAACAGTGGGATGAAGCACACAGCTTCTAGTGGCAAGAGTCAAGGAAGAATAACTAAAAAGGATCTGCGGTTGCATAAATTGGTCTTTGAGGAAGATGTGTTGCCAGATGGAACTGAAGTTGCCTACTATGCTCGCGGACAGAAACTTTTGGTGGGCTACAAAAAAGGGTTTGGAATTGTTTGTAGCTGCTGTGACTCTGAGGTAAGCCCCTCACAATTTGAAGCTCATGCTGGTTGGGCATCGCGACGCAAGCCTTATCTGCACATATACACATCCAACGGTGTCTCTCTCCATGAACTGTCCATTTCTCTATCAAAAGGTCGGAGGTTTTCTACCAATGAAAATGATGATCTCTGCAGCATCTGCTCTGATGGAGGGAGTCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGACTGTGTTCCTCTGCCAAGCATTCCAACTGGCACTTGGTATTGTAAATATTGCCAAAACCTGTTCCAGAAAGACAAATATGTGGGGCATAACATGAATGCATTGGCAGCAGGAAGGATTGCAGGGGTTGATCCTTTAGAACAGATAAACAAACGATGCATTCGTATTGTCAAGACTGTAGAGGTTGACCATGGTGGATGTGCATTATGCAGAAGCCATGATTTCAGCAAAAGCTTTGGTCCTCGAACAGTGATTATTTGTGATCAGTGTGAAAGGGAATATCACGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCACTGATTGCTGTCAGATTCATTCTGCTCTGCTTAATTTGGTCACCTGTGGGGCAGAGAATCTTCCTGATTCTCTATTAAGTATGATTCGAAAGAAGCATGAAGAAAAGGGTGTGGAAAATGGGGCTGGTCTAGATATAAAATGGAGAATCTTAAATTGGAAACTTGCTGCTTCGGATGAAACTAGGCAACTGCTTTCGAAGGCCGTAGCAATCTTCCATGAGCGGTTTGATCCAATAGTTGATTCAACTTCCGGCCGTGATTTCATTCCAACAATGCTTTATGGAAGGAACATCAGGGGTCAAGATTTTGGTGGGATGTATTGTGCAGTGCTAACAGTGAATCAAGTGGTTGTTTCTGCAGGCATATTTCGTATATTTGGGGCAGAAGTGGCAGAGCTTCCCTTGGTGGCAACCATTGCAGATTGCCAAGGACAGGGTTACTTCCAGTCCTTGTTTTCTTGCATAGAAAGGCTGCTTGGATCTTTAAATGTGAAACAATTCGTCCTACCGGCCGCTGAAGAGGCGGAATCAATATGGACTAGTAAATTTGGCTTTACGAAGTTAGCACAAGATGAGGTAAACAATTACAAGAGATATTATCACATGATGATATTTCAAGGGACCCCCGTGCTGAGGAAGGCAGTTCCTGCACCACCCGATTTGTGCGTCAATGCGGTGTAA 2895 0.4577 MANGKDSDEFRVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKIKNGVQDSPSNKRSKKSRDKKDEHNSAKPLPDDVIEPIVLEEFKGKEVNAIEDIDDVMSEEEAKSDVVDLSGDDEPKNLVSESMGKREPMDEASVPICDVEPKGDDVETVSDNEPKSIPMLESQQEAAMDDIAPPTCQPESKEHQTNEDDLQKSLTTENLSGGETCSPEEKGFIVTTPVSLNGDNKVKAMIGGPPRRFTRSALKQQQDDSKLSNYGKEACDRAIGFVDVKRESEDASLIATPTQTKVSKNSASKKFPTKLKDLLATGILEGLPVNYVRGGKARRAGESGLRGEIRRSGILCYCEVCNGVEVVSPTVFELHAGSSNKRPPEYIYLENGNTLRDVMNTCSSIAIDALEEAVQKILGDFTFKKSAICLNCRVAISQAGKGWSRLLCDTCVVLEESQPTPIQIAEASNSCSSPAVTLRSPEPVVVPSTLNSGMKHTASSGKSQGRITKKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKGRRFSTNENDDLCSICSDGGSLLCCDGCPRAFHIDCVPLPSIPTGTWYCKYCQNLFQKDKYVGHNMNALAAGRIAGVDPLEQINKRCIRIVKTVEVDHGGCALCRSHDFSKSFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCCQIHSALLNLVTCGAENLPDSLLSMIRKKHEEKGVENGAGLDIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRIFGAEVAELPLVATIADCQGQGYFQSLFSCIERLLGSLNVKQFVLPAAEEAESIWTSKFGFTKLAQDEVNNYKRYYHMMIFQGTPVLRKAVPAPPDLCVNAV 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0286 964 FunFam PHD finger family protein 783 952 - -
Lele32g0286 964 Pfam PHD-finger 599 640 IPR019787 -
Lele32g0286 964 CDD PHD1_AIRE 598 638 - -
Lele32g0286 964 ProSiteProfiles Zinc finger PHD-type profile. 596 641 IPR019787 -
Lele32g0286 964 MobiDBLite consensus disorder prediction 54 79 - -
Lele32g0286 964 SUPERFAMILY FYVE/PHD zinc finger 678 744 IPR011011 -
Lele32g0286 964 Gene3D - 783 948 - -
Lele32g0286 964 SUPERFAMILY FYVE/PHD zinc finger 586 641 IPR011011 -
Lele32g0286 964 MobiDBLite consensus disorder prediction 97 195 - -
Lele32g0286 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 744 IPR013083 -
Lele32g0286 964 Pfam Tify domain binding domain 337 392 IPR032308 -
Lele32g0286 964 Pfam Tify domain binding domain 532 580 IPR032308 -
Lele32g0286 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 662 IPR013083 -
Lele32g0286 964 MobiDBLite consensus disorder prediction 106 157 - -
Lele32g0286 964 MobiDBLite consensus disorder prediction 37 79 - -
Lele32g0286 964 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 585 662 - -
Lele32g0286 964 PANTHER AUTOIMMUNE REGULATOR 103 953 - -
Lele32g0286 964 SMART PHD_3 598 639 IPR001965 -
Lele32g0286 964 SMART PHD_3 686 742 IPR001965 -
Lele32g0286 964 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 842 942 IPR016181 -
Lele32g0286 964 ProSitePatterns Zinc finger PHD-type signature. 599 638 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0286 Lele-ChrLele32 1783007 1788353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0286 302 953 PHD Transcription Factor Family AT2G36720 46.862 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele32g0286 TDBD 3.6e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1118 11 18448483 18459413 Lele32g0286 32 1783007 1788353 CCT
Lele12g0203 12 1613262 1616271 Lele32g0286 32 1783007 1788353 CCT
Lele09g1120 09 20352725 20355782 Lele32g0286 32 1783007 1788353 CCT
Lele10g1089 10 22301028 22304054 Lele32g0286 32 1783007 1788353 CCT
Lele29g0307 29 1817917 1823180 Lele32g0286 32 1783007 1788353 hybridization
Lele30g1108 30 14152426 14157771 Lele32g0286 32 1783007 1788353 hybridization