Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0282 ATGGGCCTGCTGGAGTATTGGGTGGCCCAATGGTCCAATCTACGAGAAACAGTTCACTACAGAAGGGGCTGCAAGATCAGAGCACCCTGTTGCGATGAAATTTTTGACTGTCGCCATTGCCATAATGAAGCTAAGAGCTCCGAAGGCATCAATTCCGTCGATCGTCACGATGTACCCCGCCACGACATTATAAAGGTCATCTGTACCTCATGTGAAACAGAACAAGATGTTCAACAGTATTGCATCAACTGTGGAATCTGCATGGGGAAGTACTTTTGTGCTACTTGCAAATTCTTCGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGTATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGTAAGAGATGTGGTGAGTTCATGAAAGCTTCTTCCATAACCCCAAGCATAAAAACTCCAGCTTCCCATTTCTCCTTTTGGCTTATTATCTACTCGAATTTTCCTGTGCTTCTTTTAGGTTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGATGTGTCGAACGAGCAATGCATCAAAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCTTGAGAGACATCACGGTCTTGCCTTGCGGCCATACCATACATTTGGAGTGCGTTAGAGAGATGGTGAAACATGGAAGGTATTCATGCCCAGTTTGTTCAAAATCCATATGTGACATGTCAAATCTGTGGAAGAAGCTTGACCAAGTGATCGCTTTGACACCAATGCCTGAAGCTTACAAAGAAAAGATGGTGTGGATACTGTGCAATGATTGTGGAGCGAACTCTCAAGTGCAGTTCCACGTTGTAGCTCATAAGTGTCAGAGTTGCAACTCATACAACACAAGACGGATACAGGGAATCCCCACCACTGCATGCAGTTCTTGGGTGGCTGAGATGGTTAGATGA 939 0.442 MGLLEYWVAQWSNLRETVHYRRGCKIRAPCCDEIFDCRHCHNEAKSSEGINSVDRHDVPRHDIIKVICTSCETEQDVQQYCINCGICMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGEFMKASSITPSIKTPASHFSFWLIIYSNFPVLLLGCCYSNVMKEGHRCVERAMHQNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMVKHGRYSCPVCSKSICDMSNLWKKLDQVIALTPMPEAYKEKMVWILCNDCGANSQVQFHVVAHKCQSCNSYNTRRIQGIPTTACSSWVAEMVR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0282 312 Gene3D - 261 300 - -
Lele32g0282 312 Pfam Zinc finger, C3HC4 type (RING finger) 188 230 IPR018957 GO:0046872
Lele32g0282 312 ProSiteProfiles Zinc finger CTCHY-type profile. 88 187 IPR017921 -
Lele32g0282 312 SMART ring_2 188 230 IPR001841 -
Lele32g0282 312 ProSiteProfiles Zinc finger RING-type profile. 188 231 IPR001841 -
Lele32g0282 312 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Lele32g0282 312 ProSiteProfiles Zinc finger CHY-type profile. 10 86 IPR008913 GO:0008270
Lele32g0282 312 SUPERFAMILY Zinc hairpin stack 89 134 IPR037275 -
Lele32g0282 312 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Lele32g0282 312 FunFam RING finger and CHY zinc finger domain-containing protein 1 259 302 - -
Lele32g0282 312 Pfam Zinc-ribbon 235 293 IPR039512 -
Lele32g0282 312 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 166 296 - -
Lele32g0282 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 260 IPR013083 -
Lele32g0282 312 SUPERFAMILY RING/U-box 187 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0282 Lele-ChrLele32 1763347 1766004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0282 19 297 C2H2 Transcription Factor Family AT3G18290 34.965 4.67e-47 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0303 29 1796860 1802230 Lele32g0282 32 1763347 1766004 hybridization
Lele30g1112 30 14180971 14183470 Lele32g0282 32 1763347 1766004 hybridization