Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0225 ATGGCGAAGGACGTTGAGGTGGCGGAGCAAGGAGAGTTCTCGGCGAAGGACTACCACGAGCCACCGCCGGCGCCGTTGATCGACCTGGAGGAGCTCGGGAAGTGGTCGTTTTACAGGGCGTCGATAGCTGAGTTCGTGGCGACGCTGCTTTTCCTGTATGTAACGGTGTTGACGATCATTGGGCAAGGCATCTCGACGGACGCTGGCGCGGGCGGCGGTGACTGCAATGGCGTCGGCATCTTGGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCCGCGGTGACATTCGGGCTGTTCCTGGGGCGGAAGGTGTCGCTGATCAGAGCGGTCTTGTACATGGTAGCACAGTGCGCCGGAGCAATCTGCGGCACCGGACTCGCCAAGGGCTTCCAAACAGCCTACTACGACCGGTACGGTGGCGGCGTCAACTACGTCCAGCCCGGCTACAACAAAGGCACCGCCCTGGGCGCCGAGATCATCGGCACCTTTGTCCTCGTCTACACCGTCTTCTCCGCCACCGATCCCAAGCGCAACGCCCGCGACTCCCATGTTCCTGTGTTGGCTCCTCTTCCCATTGGATTCGCCGTCTTCATGGTTCACTTGGCTACAATTCCGGTCACCGGTACCGGTATCAACCCTGCAAGGAGTTTCGGAGCTGCTGTAATCTATAACGGTGACAAAGCCTGGGATGATCACTGGATTTTCTGGGTTGGCCCAGCAATTGGAGCCTTTGCTGCTGCAGTATACCATCAGTACATTCTGAGAGCTGCGGCCATTAAGGCCCTCGGATCCTTCAGGAGCAACAATTAA 858 0.5851 MAKDVEVAEQGEFSAKDYHEPPPAPLIDLEELGKWSFYRASIAEFVATLLFLYVTVLTIIGQGISTDAGAGGGDCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYMVAQCAGAICGTGLAKGFQTAYYDRYGGGVNYVQPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNGDKAWDDHWIFWVGPAIGAFAAAVYHQYILRAAAIKALGSFRSNN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0225 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 274 IPR034294 -
Lele32g0225 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Lele32g0225 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 SUPERFAMILY Aquaporin-like 32 271 IPR023271 -
Lele32g0225 285 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lele32g0225 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele32g0225 285 FunFam Probable aquaporin PIP1-2 24 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0225 Lele-ChrLele32 1346909 1348711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0225 1 283 Major Intrinsic Protein MIP AT5G60660 80.212 4.49e-167 462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1173 11 18958216 18967432 Lele32g0225 32 1346909 1348711 CCT
Lele12g0150 12 1145529 1153666 Lele32g0225 32 1346909 1348711 CCT
Lele09g1172 09 20795677 20798433 Lele32g0225 32 1346909 1348711 CCT
Lele10g1150 10 22775939 22776933 Lele32g0225 32 1346909 1348711 CCT
Lele29g0238 29 1377173 1378879 Lele32g0225 32 1346909 1348711 hybridization
Lele30g1170 30 14611917 14613701 Lele32g0225 32 1346909 1348711 hybridization