LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0221	ATGTCAGTTCTTAATCCCAGCGAGAATATGTGCACAGAGAAAAAGCCTGTGAGTGAAGGACATGATGCGGTTTCGTGTCAAAGAACGGCTTCTCTTCCAGCTCACAAGGTTGATAATAATACAATGGGAATAAGTGAAGAGTCCATACATACTCGTCGCTGGAAGCGAGAGAATCTTTCACTGCAAATACCCTCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGTAACAATCAAGATGCCTCAGACTCCAAGTCCTTCTCCAACTCCCAAGAGAGTTAATTTTCTTGTGACTTCTCTCTCTGTTGATACCTCCATTAATAAGTCTCCAGGACCTTCAGCATCAAGAGGAAGACCATCCATAAGAAGTCTCTTACCAAAACTGAGCTTTATTTCTCGGGCGTCATCAGATGTCGAAAAGGCTTCTACTGCAGCTTCAGAAGGTTCTTCTTCAGCCACTCGAGAAAAGCCTCCAATCTCAAGAACCTTGTCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCTTTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTTCTTTGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCAGTGCCAATCAACAATAAAGAGAAAAGCTTAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACCCCACGAGTGAAGGATGGAATTGAATTATCCACAGCATCCCCCACAAAGGATTCTGGTTCAGAAAACGATGTTGCTGGTGGTGAAGATATAGCTGAAGAAGAGGCTGTATGCAGAATTTGTATGGTTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGTGCTATTAAGTGGTTTGGCATCAAAGGAAACAAAACATGTGATGTGTGCAAGCAGGAGGTTCGGAACCTACCTGTCACTCTTCTCCGGATCCAAAGTGTCCGGGGTCGACATACTGGAGCAAACTGGTCTCAGCTGGACAATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTAAAGCAATTGCCATATCTCTTCCGTTCTCATGCGTACTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTTAAGAGCAGGTTCGTCTGGATATATGCATCAGCGCAGTTTGCTCTGGTGGTTCTATTTGCTCATATATTTTACTCCTTGGTAATTGCAAAAGATATCCAAGTGCAGGCAATTCTGTCAATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTATTACGGAGTTCTTCAGATTGAGAAGAAGATGGCAGGCTTCGTCAGAGCAGAATAATAATGGCCCTCAGGTGATGGCACCTAATTCAGGCTCTTCCACGGCCAGGGCGCAGAATCACCAAACCTCAAGTGAGATATTGTCACAGGCTTCTTCAAGGATTGCTCAAACTAGAATGAATATTGCGAGCAGAATAGCAGCACAAGCACCGCCTCTTCTCTGCGATCGTCCCGTTCCCATCTTCTCTTTCCTAGGTGTCCGCAAGTTGGGGTTTGTGCCCCAGTTAAAACAGAGTGGGAGACTGAACAGAAAATTGCCCATAAATATGGCTTGGAGTGCGGAGAATTCTGAGATACGTGTTGAAAGCAAGATTGGAGCGGTTCGTCCAGCAGAGGATGCTTTTGCTGCAGAAGCAGTTGAAGCTTTGAAAGCTGGGAAGGTTATTGCTGTACCCACTGATACACTCTATGGGTTTGCTTGTGATGCTTGCTCGTTGGAAGCAGTTAACCGAATTTATGAGATTAAAGGACGTAAACATACAAGCCCCTTGGCAATTTGTGTTGGGGATGTGTCAGACATAGAGCGTTTTGCACTAACTGACTATTTGCCTCACGGTCTGCTAGATTCCCTCCTTCCAGGTCCTGTTACTGTTGTGCTGAATCGAGGAGAATCAAGCATTCTTGAACGATCTTTGAACCCCGGACTTTATAGCATAGGGGTTAGAGTGCCTGACAGCAATTTCATTCGGGTGATTGCTCGTGGCTCAGGAACTGCCTTGGCCCTCACCAGCGCAAACCTAAGTGGACAGCCAAGTAGTGTTTGCATCAAGGATTTTGAGGACCTCTGGCGACATTGTGCCTATGTCTATGATGGTGGTTTGCTTCCATCAGGACGTGCAGGTTCCACTATTGTGGACCTCACCGTACCATCCAAATACAAGATACTCAGACCTGGAAGTGCAAAGGAAGAGACGGTGGCCATCTTGGAGAAGCATTCTCTGGTTGAAGAAGTAAATGAGCAGTGA	2430	0.4519	MSVLNPSENMCTEKKPVSEGHDAVSCQRTASLPAHKVDNNTMGISEESIHTRRWKRENLSLQIPSRTSEESSQDFVTIKMPQTPSPSPTPKRVNFLVTSLSVDTSINKSPGPSASRGRPSIRSLLPKLSFISRASSDVEKASTAASEGSSSATREKPPISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTSLQRSSAQRQIVRSLSVPINNKEKSLRRMDSFFRVIPSTPRVKDGIELSTASPTKDSGSENDVAGGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFGIKGNKTCDVCKQEVRNLPVTLLRIQSVRGRHTGANWSQLDNVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTKAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLVIAKDIQVQAILSILLATFAGFGVVMSGSSIITEFFRLRRRWQASSEQNNNGPQVMAPNSGSSTARAQNHQTSSEILSQASSRIAQTRMNIASRIAAQAPPLLCDRPVPIFSFLGVRKLGFVPQLKQSGRLNRKLPINMAWSAENSEIRVESKIGAVRPAEDAFAAEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDIERFALTDYLPHGLLDSLLPGPVTVVLNRGESSILERSLNPGLYSIGVRVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEDLWRHCAYVYDGGLLPSGRAGSTIVDLTVPSKYKILRPGSAKEETVAILEKHSLVEEVNEQ	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0221	809	TIGRFAM	TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family	604	794	IPR006070	GO:0003725
	Lele32g0221	809	SUPERFAMILY	YrdC/RibB	604	793	IPR017945	-
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	243	263	-	-
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	62	82	-	-
	Lele32g0221	809	Pfam	Telomere recombination	609	787	IPR006070	GO:0003725
	Lele32g0221	809	Pfam	RING-variant domain	275	322	IPR011016	GO:0008270
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	136	159	-	-
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	62	91	-	-
	Lele32g0221	809	ProSiteProfiles	YrdC-like domain profile.	601	789	IPR006070	GO:0003725
	Lele32g0221	809	ProSiteProfiles	Zinc finger RING-CH-type profile.	267	329	IPR011016	GO:0008270
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lele32g0221	809	SUPERFAMILY	RING/U-box	271	326	-	-
	Lele32g0221	809	Gene3D	DHBP synthase	591	799	-	-
	Lele32g0221	809	SMART	ringv_2	274	323	IPR011016	GO:0008270
	Lele32g0221	809	MobiDBLite	consensus disorder prediction	485	511	-	-
	Lele32g0221	809	PANTHER	OS02G0165000 PROTEIN	34	491	-	-
	Lele32g0221	809	FunFam	YrdC N6-threonylcarbamoyltransferase domain containing	595	797	-	-
	Lele32g0221	809	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	262	330	IPR013083	-
	Lele32g0221	809	CDD	RING_CH-C4HC3_MARCH	275	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0221	Lele-ChrLele32	1317179	1326146	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0221	269	329	C3H Transcription Factor Family	AT2G37950	48.387	5.98e-14	69.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele29g0232	29	1349925	1352281	Lele32g0221	32	1317179	1326146	hybridization
	Lele30g1176	30	14636651	14638747	Lele32g0221	32	1317179	1326146	hybridization