LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g0218	ATGATTTGTAGGCAGTTTCCTGTTAAGGAAACTCACAAAGTTGTTCGTGGAGAGGATGAAAATGGTAATAAGATGGTAAATGAATATGTTCGGGAGCACAAGATTGGTTCTGGTAGTTATGGGAAAGTGGCTTTATACCGAAGTTGTGCGGATGGAAAGCATTATGCAATCAAGGCCTTTCATAAGTCTCATTTACAGAAGCTACGAGTTGCACCCTCAGAGACTGCCATGACTGATGTTCTACGGGAGGTACTCATCATGAAAATGCTGGAACATCCTAACATAGTCAATCTTATTGAGGTGATTGATGACCCAGAATCAGATCACTTCTACATGGTACTTGAATATGTAGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCTTCCTGTAGCTTGGGTGAGGAGACTACTAGGAAATACTTGCGTGATATAGTTTCAGGATTAAGATACCTTCATGCTCATAATATAGTGCACGGGGATATTAAACCTGATAATCTGTTGGTTACTCGTCATGGTACAGTAAAGATTGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGAACTTCGCCGATCGCCGGGGACTCCTGTTTTCACTGCTCCAGAATGTTGTTTAGGTCTTACCTATAACGGCAAAGCTGCAGACACATGGGCAGTTGGAGTTACTTTGTACTGCATGATCTTGGGAGAATACCCATTTCTTGGAGACACACTTCAAGATACTTATGACAAAATAGTCAATAATCCTTTAGTGCTCCCAGATGATTTGAATCCCCAAATAAGAAACTTACTGGAAGGATTACTTTGCAAAGATCCAAAGCATCGGATGATATTGGGCGATGTTGCGCAGCATAGCTGGGTTATTGGAGATGATGGGCCAATTCCCGAATATTTGTGTTGGTGCAGACGCAAGAGATTAAGAGGGGAAGATTTGAATAGCAACATGCTTGCTTAA	963	0.4195	MICRQFPVKETHKVVRGEDENGNKMVNEYVREHKIGSGSYGKVALYRSCADGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGSGPSCSLGEETTRKYLRDIVSGLRYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECCLGLTYNGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPDDLNPQIRNLLEGLLCKDPKHRMILGDVAQHSWVIGDDGPIPEYLCWCRRKRLRGEDLNSNMLA	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g0218	320	ProSiteProfiles	Protein kinase domain profile.	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g0218	320	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	21	292	-	-
	Lele32g0218	320	FunFam	Serine/threonine-protein kinase GRIK2	19	318	-	-
	Lele32g0218	320	ProSitePatterns	Protein kinases ATP-binding region signature.	35	58	IPR017441	GO:0005524
	Lele32g0218	320	Gene3D	Phosphorylase Kinase; domain 1	23	125	-	-
	Lele32g0218	320	Gene3D	Transferase(Phosphotransferase) domain 1	127	296	-	-
	Lele32g0218	320	FunFam	Serine/threonine-protein kinase Ssp1	23	125	-	-
	Lele32g0218	320	Pfam	Protein kinase domain	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g0218	320	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	156	168	IPR008271	GO:0004672\|GO:0006468
	Lele32g0218	320	SUPERFAMILY	Protein kinase-like (PK-like)	25	302	IPR011009	-
	Lele32g0218	320	CDD	STKc_LKB1_CaMKK	35	290	-	-
	Lele32g0218	320	SMART	serkin_6	29	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g0218	Lele-ChrLele32	1297894	1300969	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g0218	24	297	CBL-interacting serine-threonine protein kinases	AT5G35410	32.482	1.55e-43	151

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Lele32g0218		Pkinase	7.2e-58	CL0016