Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0186 ATGGAGATCTATGCAATTGTAATATTTCCCTTTGTTTTGTTGATCACTATTGCTCTTATTGTACTGGAACATTTGGAGGTTATTCAATCTGAAGTTTGTCTGGCAATCATGAGTGAGGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACAGAGGGGAGATGCCCTGCGTGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAGGAAGATGAAGAGTCAGAAAGCAAAATCTAAGTCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTGCGAGTTATTCAGCGTAATCTTGTCTATATAGTTGGATTACCACTTAATCTGGCAGATGAAGAAATTCTTCAGCGGCGAGAGTATTTCAGTCAGTATGGGAAAGTCTTGAAAGTGTCAATGTCTCGGACAGCGGCTGGTGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGCTGTATTCAAAATGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGTACAGGCATATGCTTGTGCTCACCCCTATCCTCTATAATGTTTGGGATATTTGGCATCTGAATCTTGCTTATTTGCTCTTCTACGTTGCACTTGCAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCCGAAACATGGTACAGGGATGTGTTGCCACCCCCAATTGATGATTACAGGAACCATTCTGCTGGAAAACCCATTGTGAAAAATGCCACAAATAATTCCACTAGCACTGCTAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAGCTCTAAATCCTGCTTCTGCGTGGGGTACAAGAGCTACAAATTGTCAGCCCCCTACTGGAGGTTTATTATGTCCAAATGGACCACCTAAGCCAAAAGCTGATGCTGTCAGTGGAACACTAGCCTTTTCTTCAGCTGTTGCAGGTTCAAGCGAGAACTTTTCATTGCCCAGTTATGCAACCAAGAGGCCACTGTCCAGTGACGGGAGTCATAATGACCTTAGAGTACAAAATAATTCATTAAAACCTGTAAAGCAATTCGATAGCATGGACAATCCAAGTAATGCAGGTGAAAAGACTGCTACATCTGCTGATGGTTCTCTTGCACCTGTTAATTCAAACAGCTTGTCTTCTTTACCGTTATCCAGAGATGGTGATGGAGGCAGTTGTACTACATCAAACACAACAAATTCTACTGACATCACTGGGCAGTCGTGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAGTGAATACTATGGTATGGTCAGATCTAATAGCCCCCCTTCTGATTATATGTTGACAAAGTCTCCTCAACTTCAAGCATCCCAGCAGCATAAAGATGACAAATTTAGAGATGTGCAATTTTCAGGCGAATCTGGTAAACCTGCTCCATCTGATTGGGAGCAGTCTGATTGGAAATTGAATTCACGACCCCAAATAGTATCAGCTACAACTGACTTGGAAGATGATATAACTTCTTTTGATAATCAAAGGCTCAACGATCCAGAAGTTGTTAGTTATTCTCCTTACATGCCTAAGTCAACAAGTTTTGTTCATGTCCCAATCCATTCTAATCATAATCTCATCCAACATGGGGAACAGCCCCATTCTGTGAATGTTGATTTTGTATCTGCAGATTCTAAGGCTGGGGATGATTCTCTATTATATCCATCCAGCATATTATGTAATGGTTACCCTGATAAATTGGTCGGCAGCTGCTCTTCTGGTTTGAATAGCACCACTGATTGTACCTCAATTCAGGATGTAAGAAATGAACAATGCATTGGAAGGTTATTCGCTGAATCAGTTAGTGCTGGAAGTGATACTGCATTGGATAAGGGCGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATGCCTGGGATGACTCACTGACATCACGGCAGAATTTGGTTAAGTTTCTTGGTGACAACACTGATAACCGGTTTGTTCCCTTAAAAAAATCAAGTTCTGTGAAAGTGCAGAATAATAGTCAATCAAGATTCTCTTTTGCAAGACAGGATGAACCTAGAATGCAAGCATTTAATGCAAACCCATCTTATGGTATTAGTGAGCAATTTCAAGGGAGGGGCTCTTTCATGCAGGATTTTTCTGAAAGAGACTTGTATAATGATAGGAAGTTGGGTATGGCAAATGGCTTTTCTTCCTGTAAACTTGAGGAATCTGAAAATCTAGGCAGTGGTCACTTTGTTCCTTCTAGTAAGCATTCCGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCACCAGGTTTTTCTTCTTACGAGAGAGTGGAACAGGCTTTCAGCTCAGTTTCTGGTTATCAGACACCCACAGCTGGAAATATTGGTGGTACAGGGGACATCGAATTAGTAGATCCTGCTATTTTGGCTGTTGGCACTGGCAGACTTCAAGGTTCACTAAACAGCCCAGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTCGAAAATGAGGCCAGACGTCAATTATTGATGCAAAGATCTCTCTCGCAACCACAGAACAGATTTTCTGAAATTGGGAGTACTTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGACCAATCACAAGTCAGCAATTTGACCCCTTTTGCTCAGTTGTCATTACAGCAGTCTAGAAATGCTCTCTTGTCTAATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTAGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGGATTAACAAGTTATATGCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACCGAACTTATGGGATGTGA 3129 0.4167 MEIYAIVIFPFVLLITIALIVLEHLEVIQSEVCLAIMSEEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQRREYFSQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRYRHMLVLTPILYNVWDIWHLNLAYLLFYVALAGLVLEPQSIVMHGSETWYRDVLPPPIDDYRNHSAGKPIVKNATNNSTSTARGSPPNGSSGRSIALNPASAWGTRATNCQPPTGGLLCPNGPPKPKADAVSGTLAFSSAVAGSSENFSLPSYATKRPLSSDGSHNDLRVQNNSLKPVKQFDSMDNPSNAGEKTATSADGSLAPVNSNSLSSLPLSRDGDGGSCTTSNTTNSTDITGQSCSSGPEEATIATNEEIQNLCSNLSSVNIDRNGQSEYYGMVRSNSPPSDYMLTKSPQLQASQQHKDDKFRDVQFSGESGKPAPSDWEQSDWKLNSRPQIVSATTDLEDDITSFDNQRLNDPEVVSYSPYMPKSTSFVHVPIHSNHNLIQHGEQPHSVNVDFVSADSKAGDDSLLYPSSILCNGYPDKLVGSCSSGLNSTTDCTSIQDVRNEQCIGRLFAESVSAGSDTALDKGESSIISNILSMDFDAWDDSLTSRQNLVKFLGDNTDNRFVPLKKSSSVKVQNNSQSRFSFARQDEPRMQAFNANPSYGISEQFQGRGSFMQDFSERDLYNDRKLGMANGFSSCKLEESENLGSGHFVPSSKHSAVSRAQISAPPGFSVPSRPPPPGFSSYERVEQAFSSVSGYQTPTAGNIGGTGDIELVDPAILAVGTGRLQGSLNSPGLDIRSSFSPQLNYFENEARRQLLMQRSLSQPQNRFSEIGSTFSQIGDSYGISSRLDQSQVSNLTPFAQLSLQQSRNALLSNGQWDGWNEVQSGSSLGVAELLRNERLGINKLYAGYDDSKYRMPNSGDLYNRTYGM 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0186 1042 MobiDBLite consensus disorder prediction 291 323 - -
Lele32g0186 1042 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 226 IPR000504 GO:0003723
Lele32g0186 1042 Gene3D - 147 228 IPR012677 -
Lele32g0186 1042 SUPERFAMILY RNA-binding domain, RBD 140 226 IPR035979 GO:0003676
Lele32g0186 1042 Pfam RING/Ubox like zinc-binding domain 45 97 - -
Lele32g0186 1042 CDD mRING-HC-C4C4_CNOT4 45 94 IPR039515 -
Lele32g0186 1042 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 226 IPR000504 GO:0003723
Lele32g0186 1042 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 147 228 - -
Lele32g0186 1042 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 37 113 - -
Lele32g0186 1042 MobiDBLite consensus disorder prediction 501 524 - -
Lele32g0186 1042 SMART rrm1_1 147 228 IPR000504 GO:0003723
Lele32g0186 1042 MobiDBLite consensus disorder prediction 401 472 - -
Lele32g0186 1042 MobiDBLite consensus disorder prediction 501 557 - -
Lele32g0186 1042 SUPERFAMILY RING/U-box 37 102 - -
Lele32g0186 1042 MobiDBLite consensus disorder prediction 295 323 - -
Lele32g0186 1042 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 37 226 IPR039780 GO:0004842|GO:0030014
Lele32g0186 1042 CDD RRM_CNOT4 141 226 IPR034261 -
Lele32g0186 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 113 IPR013083 -
Lele32g0186 1042 SMART rrm2_1 147 228 IPR003954 GO:0003676
Lele32g0186 1042 ProSiteProfiles Zinc finger RING-type profile. 45 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0186 Lele-ChrLele32 1115839 1122093 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1206 09 21005612 21020279 Lele32g0186 32 1115839 1122093 CCT
Lele29g0196 29 1133171 1143880 Lele32g0186 32 1115839 1122093 hybridization
Lele30g1209 30 14837965 14849850 Lele32g0186 32 1115839 1122093 hybridization