Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0177 ATGCCTTCTTTTCTACTGTCATTCTGTTTGGCTTTGGAATTTTTAGAAAAGAGAAAGATGCATAGAGCACGAGCTGAAGGCCTAACCTTCACAAAGGAACCATATATTGAGGATGTTGGACCACGCAGAATCAAGAGTATGCAATTCACTGCATTATCAGAGTCAGAGATCAGTAAACTTGCTGAGGTTCAAGTTGCAAGAGGTGTATACTATGATGAAAGAAGAAAGCCAATAGAGGATGGCTTGTTGGATGCCCGCATGGGCCCTGCTAATAAGAGTTGCACATGTGCAACATGCCTTGGGAATTTTGCTGACTGTCCAGGGCACTACGGATACTTAAACCTTGCTCTTCCAGTCTTCAATGTTGGATATAAAGAAAAAATTTTGCAAATATTGAAGTGCATTTGTAAGGGCTGTGCTCGTATACTCTTGGATGAAGATTCTTGTAAAGAACGCTTGAAGAAGATGAGAAGCCCCAAAATAGAGCCTATGAAGAAGATTGCAATAGCTAAAAGTCTTATTGATAAATGTAGCGCCATGACAAGTAGCAAAGCAGTGAAGTGTCTAAGATGTGGATTTATTAATGGTCCAGTGAAGAAGCTTGTGTCTAATCTAGGCATCTTGCATGATACTTCAAAATGTATTGATGGCAATGTGGACGAGTTTCGATCTGCAATTTCTCATACCAGAGAGTCTAAGGCTCCCATCAACTTGACTACTCATGTTCTTAACCCTCACAGAGTTCTTTCCCTCTTCAAAAGGATGCTTGATGAGGACTGTGAATTACTTTATCTTGCAGACAGACCTGAGAAATTCATTATAACGAACATGGCTGTGCCACCTATACCTATTCGACCTTCAGTTATAATGGATAATTCCCAGAGCAATGAAAATGATGCGACAGAGAGGCTAAAGCAAATAATTCAAGCAAATGCTACCCTTCGCCAGGAATTACAGGAAGCTAGCGCGGCATTCAAAACTCTGGATGGCTGGGAAGTACTTCAAGCGGAGGTTGCTCAATTCATAAATAGTGATGTGCGTGGTATTCCATTTAATATGCAACGTGCCAAGCCATTGGCTGGCTTTGTTCAACGCCTTAAAGGAAAGCAGGGGCGTTTTCGTGGCAACTTATCAGGGAAACGTGTTGAGTTTACTGGCAGGACAGTCATTTCACCGGATCCTAATCTGAAAATTTCTGAGGTCGCAATACCAATCCATATGGCTCGTATATTGACTTTTCCTGAGTGTGTTTCCCATCACAACATTGAGAAGTTGAGACAGTGTGTGAGAAATGGCCCTGATAAGTATCCTGGTGCAAGGTTGCTTAGACAAGCTGGTGGTCCAACAAGGTCCTTAAAAGTTTCTTTACGGAAGCGCTTCGCAGATGAATTGAGGTATGGTGATATTGTTGATCGTCATTTGGAAGATGGAGACGTTGTGCTTTTTAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCATAGGGCTAGAGTTATGCCTTGGAGAACTTTGAGATTCAATGAATCAGTTTGCAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATATGCATGTACCGCAGACCGAGGAGGCACGGACAGAGGCTATTTTATTGATGGGGGTGCAAAACAATTTATGCACACCAAAGAATGGGGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCCTCCTTTTTGATAACAAGAAAAGATACTTTTTATGATCGTTCTACTTGTGCACTTATTTGCTCGTACATGGGTGATGCCATGGATATTATTGATCTGCCAACTCCGGCAATTATAAAGCCCATAGAGTTTTGGAGTGGGAAACAGATATTTAGTGTTCTAATTCGCTCTCATGCAAATGTGAGGACCTATGTGAATCTCACTGTTAAGGAGAAGATCTACAGTACAAAGCTTGATGACAGGAAAAGAGAGTTAAAAACAATGTGTCCTAATGATGGGTTTGTTTATTTTCGCAACAGTGAGTTGATTTCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCGATACTACTAAGAGATTATAAAGCTCACGCTGCAGCCTCTTGCATGAACCGTTTAGCTAAGTTGAGTGCTCGATGGATAGGCAATCGTGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGGTATTGATCAACAAGAAAGATGAAACAATTTCAGATAACTACAAAAAATGTGATGATTTTATCAAGGCCTTCAATGAAGGAAAGTTAGAACTCAAAGCTGGTTGTGATGCTGCTCAAACATTAGAGACTCTGATAACTGGTGTATTGAATGGCATTCGAGATACTGCAGGGAAGGTTTGCATGCAAACACTTCACTGGAGAAATAGTCCCTTGATCATGTCACAGTGCGGCTCCAAAGGATCTCCTATAAATATCAGTCAAATGGTTGCGTGTGTTGGTCAACAGTCAGTTGGAGGTCGTCGAGCCCCCAATGGGTTCATGGACCGGAGTCTTCCTCATTTCCCAAGAAATGAAAAAAAACCTGCAGCGAAAGGTTTTGTAGCCAATTCCTTTTATAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTATATGTCTCGAAGATTAATAAAAGCTTTGGAGGACTTGTTTGTCCACTATGATAACACTGTAAGAAACGCTAGTAGTTGTGTAGTCCAATTTTGCTATGGAGATGATGGTATGGATCCAGCTGGCATGGAAGGAAAAAATGGAAAACCGTTAAATTTTGAGCGGTTGTTTATGAAAAGCAAGGCTATTTGTCCCAGCGATGGAGATGATGAAATCCTATCCTCCTCTGGTGTGTCTAAAGTAATGCAAGAGAAACTGTCAAAAGTTGGTATGTTGGGAGAGAAAGGAGTTTCAGAGGATGATACAAGTTCTGATGTGGTTTGCTCTGCTGACTTCATCAATTCTCTACAATCCTTCATCAGAGATAAAGTCAGAATCTCATCGGAAACTGATGAAACTTCTGTGGACGATGACACTACAAATCAGAAAAAATTTATTCAAACAATATCTGGTGTTACTAGTAGACAGCTAGAGGTTTTCCTGGATATATGTCTTTCTCGATATCGTTCTAAAAGAATCGAGGCTGGATGTCCAATTGGTGCCATTGGTGCTCAAAGTATTGGAGAGCCTGGGACACAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGCGCCAAGAAAATCAGCACGCCCATCATTACAGCAATACTTGATTGTGATGATAATGCTAATACTGCGAGGGTGGTAAAAGGTCGAATTGAGAAAACAAACTTGGGCCAGATAGCAAAGGGCATAAAAATTGTGATGACGAACAGGTTAGCATCAATTGTTGTCACACTCGATATGAAAAGAATCCAAGAAGCACAATTGAATATAGATGCTAATATTGTAAGGGAATCGATTTTGCAAGCTCCAAGATTAAAATTGAAGCCAGAGCACATTAATGTTTTGGATATCAAAAAGCTTGAAGTTGTACCCCAAGATGCAGATAGAAGTAAAATCAACTTTCAACTTAACCATCTAAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGTGACAAAGATGGAGAAGTTCAAATTGTTGGTAGAAGGCACGGGCCTTCAAAATGTTATGGGTATTGAGGGTGTCGATGGACGTAAAACTCTGAGTAATCATATCATTGAAGTAGAGCAGACACTGGGAATTGAAGCAGCTAGAAAATGCATCATTGAAGAGATTAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGCCATATGATGCTTTTGGCCGATGTGATGACCTCCAGGGGTGAAGTCCTTGGAATAACAAGATTTGGAATCCAAAAGATGGACAAGAGTGTGTTAATGCTTGCATCATTCGAGAAGACTGCAGATCACCTCTTCAATGCTTCTGTGCATGGGAGGGATGATCGGATTGAAGGAGTTACTGAATGCATAATCATGGGCATCCCGATTCAGATAGGCACTGGAATGATCAGAGTTAAACAAAGATTGGATCCTCCGGCGCTGTGTCAAGGTGCTGATCCTATTCTGGCTTGA 4269 0.4083 MPSFLLSFCLALEFLEKRKMHRARAEGLTFTKEPYIEDVGPRRIKSMQFTALSESEISKLAEVQVARGVYYDERRKPIEDGLLDARMGPANKSCTCATCLGNFADCPGHYGYLNLALPVFNVGYKEKILQILKCICKGCARILLDEDSCKERLKKMRSPKIEPMKKIAIAKSLIDKCSAMTSSKAVKCLRCGFINGPVKKLVSNLGILHDTSKCIDGNVDEFRSAISHTRESKAPINLTTHVLNPHRVLSLFKRMLDEDCELLYLADRPEKFIITNMAVPPIPIRPSVIMDNSQSNENDATERLKQIIQANATLRQELQEASAAFKTLDGWEVLQAEVAQFINSDVRGIPFNMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTFPECVSHHNIEKLRQCVRNGPDKYPGARLLRQAGGPTRSLKVSLRKRFADELRYGDIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTCALICSYMGDAMDIIDLPTPAIIKPIEFWSGKQIFSVLIRSHANVRTYVNLTVKEKIYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSILLRDYKAHAAASCMNRLAKLSARWIGNRGFSIGIDDVQPKEVLINKKDETISDNYKKCDDFIKAFNEGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMDRSLPHFPRNEKKPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNASSCVVQFCYGDDGMDPAGMEGKNGKPLNFERLFMKSKAICPSDGDDEILSSSGVSKVMQEKLSKVGMLGEKGVSEDDTSSDVVCSADFINSLQSFIRDKVRISSETDETSVDDDTTNQKKFIQTISGVTSRQLEVFLDICLSRYRSKRIEAGCPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILDCDDNANTARVVKGRIEKTNLGQIAKGIKIVMTNRLASIVVTLDMKRIQEAQLNIDANIVRESILQAPRLKLKPEHINVLDIKKLEVVPQDADRSKINFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKVTKMEKFKLLVEGTGLQNVMGIEGVDGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDRIEGVTECIIMGIPIQIGTGMIRVKQRLDPPALCQGADPILA 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0177 1422 Gene3D - 845 903 - -
Lele32g0177 1422 Pfam RNA polymerase Rpb1, domain 5 865 1357 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 FunFam DNA-directed RNA polymerase subunit 1357 1402 - -
Lele32g0177 1422 Gene3D - 1355 1409 - -
Lele32g0177 1422 Gene3D RNA polymerase II, clamp domain 34 157 IPR044893 -
Lele32g0177 1422 SMART rpolaneu7 270 573 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 Coils Coil 297 324 - -
Lele32g0177 1422 Pfam RNA polymerase Rpb1, domain 3 548 727 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 Pfam RNA polymerase Rpb1, domain 4 756 858 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 Gene3D RNA polymerase Rpb1, domain 3 553 726 IPR042102 -
Lele32g0177 1422 Pfam RNA polymerase Rpb1, domain 1 42 377 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 Gene3D - 727 844 IPR038120 -
Lele32g0177 1422 CDD RNAP_III_Rpc1_C 1060 1402 IPR035698 -
Lele32g0177 1422 CDD RNAP_III_RPC1_N 52 915 IPR035697 -
Lele32g0177 1422 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 36 1406 - -
Lele32g0177 1422 FunFam DNA-directed RNA polymerase subunit 553 726 - -
Lele32g0177 1422 Pfam RNA polymerase Rpb1, domain 2 379 545 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lele32g0177 1422 Gene3D - 370 552 - -
Lele32g0177 1422 Gene3D RNA polymerase ii 412 472 - -
Lele32g0177 1422 FunFam DNA-directed RNA polymerase II subunit RPB1 457 552 - -
Lele32g0177 1422 PANTHER DNA-DIRECTED RNA POLYMERASE 48 1406 IPR045867 GO:0003899|GO:0006351
Lele32g0177 1422 Gene3D - 904 955 - -
Lele32g0177 1422 FunFam DNA-directed RNA polymerase subunit 729 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0177 Lele-ChrLele32 1032545 1046004 Wgd