Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0117 ATGAGTTTCGTCTTCCGAGGGAGTAGAGGAGATATGGAAAGTGGATTTTCAGAATATGTTCCCCAAAGAACCACTATGCGTGTCCATCCAACTCGGCCAGTAAATAGCAATGCTCTAGCTTTTCTCATTACAGTTATCTTGCTGTTTATGATATTGAACTCTCCCCAAATGTCACATCTTTTGATGTGGCTTATGCTGGTTGTGTCTGTGATGGCCACAAGCCTGAGGATGTATGTAAGTTGGCAACAGCTTCAAGCTCAAGCAAGGGCTCATGCTACAGCAGCTGCTGAATTACAATTTCACGTGCCACCATCGATAGCAATTGCAACTAGAGGACGCTTGCAAGAACTCAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGGTATCATGCCTCAGGTTGGTGACTGTCAACCTATCCAAATTGAGTACTCTTTTAGGGCAAAACAGACATGCCTTAGTGAAGTTGCTGAATTTGGCTTTGCCTGCGGTTTTGAACTGATGTCCCCAGTTGTCACTGATGTTGCTAGAAAAACGAGGGATGGCTCAGCTGGGACGGCATCCTCTTCACGAGCAACCGAGGTTAAGCAAGAGAATGGAGGGACAGAGGGAAGTGTGAAGGGTAATGAAGATGAGCTAACGTGTACTATATGTTTGGAACAAGTGAAGAGAGGGGAACTAGTCAGTAGCTTGCCATGTTTGCATCAGTTTCATATGAACTGCATCGATCCATGGCTGAGACAGCAAGCAAAATGCCCAGTGTGTAAATTAGGATGGGGTCTGGATGGCAGGCAAATAGGGGGGAGACTGATTCTGAAGGATTAG 834 0.4568 MSFVFRGSRGDMESGFSEYVPQRTTMRVHPTRPVNSNALAFLITVILLFMILNSPQMSHLLMWLMLVVSVMATSLRMYVSWQQLQAQARAHATAAAELQFHVPPSIAIATRGRLQELRLQLALLDREFDELGIMPQVGDCQPIQIEYSFRAKQTCLSEVAEFGFACGFELMSPVVTDVARKTRDGSAGTASSSRATEVKQENGGTEGSVKGNEDELTCTICLEQVKRGELVSSLPCLHQFHMNCIDPWLRQQAKCPVCKLGWGLDGRQIGGRLILKD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0117 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 262 IPR013083 -
Lele32g0117 277 Pfam Ring finger domain 217 259 IPR001841 -
Lele32g0117 277 SUPERFAMILY RING/U-box 213 263 - -
Lele32g0117 277 CDD RING-H2_PA-TM-RING 217 259 - -
Lele32g0117 277 MobiDBLite consensus disorder prediction 184 210 - -
Lele32g0117 277 SMART ring_2 218 258 IPR001841 -
Lele32g0117 277 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Lele32g0117 277 MobiDBLite consensus disorder prediction 185 207 - -
Lele32g0117 277 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0117 Lele-ChrLele32 665731 668089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0117 1 262 C3H Transcription Factor Family AT3G55530 53.285 4.95e-80 241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0123 29 695710 698072 Lele32g0117 32 665731 668089 hybridization
Lele30g1278 30 15302845 15316138 Lele32g0117 32 665731 668089 hybridization