Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0116 ATGAACTCCGATGTGGCTCCCCCTCCGGCCTCCTACTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTAGATCGGGAAGATGTCGCTTGCCCTCACTGCCAAAGCGGCTTCGTTGAAGAAATCCACAACCACCCTTCCTCCGATCATCATCAACTCAGCCCCTTACCTCCTTCTATCTTCCCTGATTCAGCTCCCACTTCCTACGATTTCAGCAGACAAGGGTTCCGCCGAAGACGCCGCAACGCCGGCAACAGATCTCCCTTTAACCCTGTTATTGTTCTCCGTGGACCCGTTGATGGAACCGCTGGCCAGAACGGTGTCGGTGGCGACCAGGAGGAAAGCAGCTTCGAGTTGTACTACGATGACGGTGACGGCTCCGGTCTCCGACCCTTACCGCCGGCCATGTCTGAGTTCTTGTTAGGGTCGGGGTTCGAGCGGCTTCTGGAGCAGTTTGCCCAGATCGAAATGAATGGGTTCGGGCGTTCCGAGAACCCGCCCGCTTCCAAAGCAGCCGTAGAGTCGATGCCTACTGTTGTTATTGAGGAGACACATGTCGGTTCCGATGCCCACTGTGCGGTGTGCAAGGAGGCGTTCCAACTCGGTACGGAGGCGCGTGAAATGCCCTGCAAGCACATATATCACTCAGAATGCATCCTGCCGTGGCTTTCAATGCGCAATTCGTGCCCTGTTTGCCGCCACGAGCTACCTTCAGATCGAAACACAGTAGACAATAGAATGTCGGGGCAAATCGATGACGAAACAGTAGGATTGACGATTTGGAGGCTGCCTGGTGGGGGCTTCGCGGTTGGAAGGTTTTCCGGGGGTCGCAGAGCTGGTGAGAGCCATTTCCCCGTTGTATACACAGAAATGGACGGTGGACTCAATACAAACGGAGTCCCGAGAACAGTTTCCCGAGCAGCGAGAAGCACCAGAGTCAGAGAAAGTCGTGGCTTTGGCAGAATTGTTCGCAGTTTCTTGTCATTCTTTGGAAGGCGTCGGACGAGGTCAACTTCATCTTCATCTGCTGATTCTGAGCGCGAGTCCATGAGTATGAGCCGTAGCGATTCGATCTCATTATTCGGTAGGAGCTCGAGGAGGCGCAGTAGAACTTGGGTTTTGGAAGATTGA 1131 0.5464 MNSDVAPPPASYWCYSCTRFVRLLDREDVACPHCQSGFVEEIHNHPSSDHHQLSPLPPSIFPDSAPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPVDGTAGQNGVGGDQEESSFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRSENPPASKAAVESMPTVVIEETHVGSDAHCAVCKEAFQLGTEAREMPCKHIYHSECILPWLSMRNSCPVCRHELPSDRNTVDNRMSGQIDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNTNGVPRTVSRAARSTRVRESRGFGRIVRSFLSFFGRRRTRSTSSSSADSERESMSMSRSDSISLFGRSSRRRSRTWVLED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0116 376 MobiDBLite consensus disorder prediction 336 366 - -
Lele32g0116 376 MobiDBLite consensus disorder prediction 336 376 - -
Lele32g0116 376 Pfam Protein of unknown function (DUF1117) 256 366 IPR010543 -
Lele32g0116 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Lele32g0116 376 CDD RING-H2_RNF126_like 192 233 - -
Lele32g0116 376 SUPERFAMILY RING/U-box 172 243 - -
Lele32g0116 376 MobiDBLite consensus disorder prediction 80 113 - -
Lele32g0116 376 FunFam E3 ubiquitin-protein ligase RING1-like 154 239 - -
Lele32g0116 376 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Lele32g0116 376 Pfam Ring finger domain 191 233 IPR001841 -
Lele32g0116 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 237 - -
Lele32g0116 376 SMART ring_2 192 232 IPR001841 -
Lele32g0116 376 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0116 Lele-ChrLele32 660236 661366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0116 131 239 C3H Transcription Factor Family AT5G01980 46.789 2.15e-28 114