Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0084 ATGACCCATCCCTCCTTCCCCAATCATTTCAGTGCCTGCTTTGACCTCAATTCTCCTTATTCTCTCCTCTCTCTTTCTTCTTCTTCTTCATCTTGCACCAATCCACCTTCCTATATTTTTTTATCTGCTCCACATCACTGCATCAATGGCACCTCCCATCTCTCTCCTCACTACCACCAATCCTTGCCTTCCTCCCCTCCTGTAAGAGAGCCGCTTCCTCTTCTTAGCCTCACCCCTTCCATTCCTCAAGATCCAGACTCTTCCTGCTCTTCCATGGAAATTGACCACAAGGACAAACACTTGGATGACGAAGCTCTGACGCTGGCTCTACGCTTAGGTCTTCCAAGCGTAGATTCAGCTGATTTAGTTTCAGACAAAGAACAAGTCACCGTCGCTTCTGCCTGTCCATCCACTGGGATCAAGAGGGATCAGTACTGGATCCCTACCCCTGCTCAGATTCTGATCGGTCAGACGCAGTTCTCGTGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTGAATATAGAAAGGGAGCAGAGTCTCTGAGAGGGACGCAGCCAACAGCGATGCTGAGGCTGCCTTGCTATTGTTGCGCTACAGGATGCAAGAACAACATTGAGCATCCAAGGGCCAAACCACTCAAAGACTTCCGAACCCTTCAGACCCATTACAAGCGAAAGCACGGGATGAAGCCTTTCATGTGTAGAAAATGCTGCAAATCCTTTGCTGTGAGAGGTGATTGGAGGACCCATGAGAAGAATTGCGGCAAGCTCTGGTATTGCTCTTGTGGTTCTGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCCTTTGGACATGCCCACACCGCTTGCTCCATTCATTCTCTTGATCAAGATGATGAAACAGCCTCTGAAATCGAACAAGAAAATCAACCCTTCCACTTCTAA 969 0.4747 MTHPSFPNHFSACFDLNSPYSLLSLSSSSSSCTNPPSYIFLSAPHHCINGTSHLSPHYHQSLPSSPPVREPLPLLSLTPSIPQDPDSSCSSMEIDHKDKHLDDEALTLALRLGLPSVDSADLVSDKEQVTVASACPSTGIKRDQYWIPTPAQILIGQTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGAESLRGTQPTAMLRLPCYCCATGCKNNIEHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCCKSFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTACSIHSLDQDDETASEIEQENQPFHF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0084 322 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Lele32g0084 322 Gene3D Classic Zinc Finger 159 182 - -
Lele32g0084 322 FunFam Zinc finger protein WIP2 213 295 - -
Lele32g0084 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Lele32g0084 322 PANTHER ZINC FINGER PROTEIN WIP2 38 318 IPR043584 GO:0003700|GO:0010468
Lele32g0084 322 SUPERFAMILY beta-beta-alpha zinc fingers 226 264 IPR036236 -
Lele32g0084 322 SUPERFAMILY beta-beta-alpha zinc fingers 155 183 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0084 Lele-ChrLele32 492055 494152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0084 63 315 C2H2 Transcription Factor Family AT1G51220 61.348 1.88e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele32g0084 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0086 29 508545 510616 Lele32g0084 32 492055 494152 hybridization
Lele30g1310 30 15487962 15490084 Lele32g0084 32 492055 494152 hybridization