Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0052 ATGGTTGCTTTGAAGCGCCAAGGAGAGACTCACTCGGGCGACGCGGGAGCGGTGGATCTACACCCGTCAGATATGGACCGGGTGGTCGGGTATGGGCCAGATCTTGCTGATGTGAACAGAATGATCTGAATTCTTCTTTGCGATTTCATGTCAATGGAATTTCTAGGGTTTTCTTTTGTTGTGGTGCATGGAAGTGGTGAACACCTCGAACTGGAGATTATGTTGCTAGGGAACTTCTGTTCATGCTATGAGTCGTTTTCGAGAAAATTTACGAGGGAGAAGGATGGAATTCCTTCATTTGGGACCTCCGAGTTTGAGATCTTTGTTGCTGCAGTGGAGTTTGGAATTGATGGCTCTATTCATGGTGAGACAGTAGGAAATGCTATTGTGAGGGATGTTGGCTGTATAGAGAATGAAAGCAAAACAGGCGGTAGTTCAGTTGAACCAACTTATAAACAAGATCAAGGTGATACATTGGCTGAAGATTCTTCTGGAGGGGATACAATTCCATCAGGAGTTCTTGCAGTATCAGTTGTTTCAGCTGAGGAGCCCTATGTGGGTCAAGAGTTTGAGTCAGAAGCAGCAGCACATGCTTTTTATAATGCATATGCCACAAATGTTGGATTCGTCATACGTGTAAGTAAACTCTCTCGATCTAGACGTGATGGGTCTGCTATTGGACGGGCACTTGTTTGCAATAAAGAGGGTTACAGAATGCCTGACAAGCGTGAAAAGATTGTAAGGCAAAGGGCAGAGACCAGGGTTGGCTGCAGGGCGATGATTTTGGTCAGAAAACTAAGTTCCGGTAAATGGGTGGTTACCAAGTTTGTTAAAGATCACACACATCCTTTGACGCCAGGAAAAGGTAGAAGGGATTGCATTTATGAACAATACCCGAATGAACATGATAAAATCCGGGAACTCTCCCAGCAGTTGACTATAGAGAAGAAGCGAGCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCATATTGAGGAGCACAATGAAAGTCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAAGGAGATGGAAAGCAAAGAACCAGAATCATAA 1086 0.4383 MVALKRQGETHSGDAGAVDLHPSDMDRVVGYGPDLADVNRMIXILLCDFMSMEFLGFSFVVVHGSGEHLELEIMLLGNFCSCYESFSRKFTREKDGIPSFGTSEFEIFVAAVEFGIDGSIHGETVGNAIVRDVGCIENESKTGGSSVEPTYKQDQGDTLAEDSSGGDTIPSGVLAVSVVSAEEPYVGQEFESEAAAHAFYNAYATNVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKLSSGKWVVTKFVKDHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLTIEKKRAATYKRHLELIFEHIEEHNESLSKKIQHIVDSVKEMESKEPES 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0052 361 MobiDBLite consensus disorder prediction 140 165 - -
Lele32g0052 361 Coils Coil 337 357 - -
Lele32g0052 361 Pfam FAR1 DNA-binding domain 199 285 IPR004330 -
Lele32g0052 361 MobiDBLite consensus disorder prediction 140 167 - -
Lele32g0052 361 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 102 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0052 Lele-ChrLele32 315559 319396 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele32g0052 FAR1 8e-30 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0050 29 302305 305986 Lele32g0052 32 315559 319396 hybridization
Lele30g1340 30 15684751 15688561 Lele32g0052 32 315559 319396 hybridization