Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0031 ATGGAATACCCTTCTTCTCATAAGGGAAAAGACAGTGAATACTGGAATTCACCTCGAGCCCAGTTGGAGGGACCAGCATCATTAGATGGTAGCACAAAAAATTCAATTTCACAGGACATGCTTAGCACCTTCTCTGAGCTCATAAATTTTGATACTTATGCTGGTTGGTGCAATGACTCATCAACCACTGATCAGGTTTTAGCTAACGGGCTTTCATCATATGCCTCGGTACCATATGCATCACTTGATGGATTCAACTTAGTGGAGGAGGGCAGTGGGTCATTCTTGGCAAGTGATGTTAATAAAAATCACAATGTGATAAGAAGTTTCCCCAACTCTGGAGAGAAAGTTGCATTTCAGCAAATGGAGGCCCAGCTTGAGCTCTCTGATGATGGAAATGATGCTGGGAACTTAAACTATAAGCATCATGTTAATGAATCTTTTGAAGAACTCAATAACTTAGCGATGGGCAATTATATAGTTTCTAGGCCACCTGGCTGGTCACTGGATGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCTGTTGGTGGAGGAATCTTGGCACAAGTTTGGGTACCAAGAAAGCATGGAAATCAATTCATCTTAACCACAAGTGAGCAACCTTATTTGCTGGACCAAATGCTTGCAGGTTATCGTGAAGTGTCAAGGACATTTACATTCTCAGCAGAAGTAAGGCCAGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTACACTAAGGCTGAATATTTGAGGATTGAGCATGCGATTAATCATGAGGTTCGTGGATCAATTGCACTTCCAGTGTTTGATCTTTACTCTGAAATGCCATGCTGTGCTGTGCTGGAACTTGTCACTACAAAGGAAAAGACTGATTTTGATAGAGAACTGGAAATTGTTTGCCAAACACTCCAGGTTGTGAATTTAAGGACTATTGTGACGCCCCGACTTCCTCCCCAGAGTCTCTCAAATAACAAAAGAGCAGGTTTAATGGAGATAATTGATGTGTTACGGGCTGTGTGTCATGCACATTGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAATTGGCAATGAAACTATGAGAGTACTAAGTAAGGAGGGCCATTCAAGTTCTAGTGATAAATGTTTATTATGCATTGAAGAATCAGCTTGCTATGTTAATGATAGAATGATGGAAGGATTTGTTCATGCATGTGTTGAGCATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAGGGCTATCCAGTCAAATCAGCCTTTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAGTATCCACTCGTTCAACATGCACGCAAATACAATTTGAGTGCTGCGGTTTCTATCAGGCTAAGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACAGTTACTGATGCTGAATTATCAGGAATATCAGGGTCACTGGTAAATCTTCAAAATGAAAAAGTACGAGATTTTTTGCCTATATCTAGGAAAAACTCTCAAATAGAATTAATGGATGGTGACAAGGACTCAGTCAGTAAGATTTCATTGAAGGCTTGCAACTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGGGTCAAAAAGGCAGGTTGAGAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTAAAGGATGCTGCAAAGAGCATTGGGGTATGTCCTACAACTCTGAAACGGATATGCAGGCAACATGGCATTTCGAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTCGATTCTGTTCAGGGAGTGGAAGGAGGGATAAAGTTTGACCCATCTACTGGGGGTTTTGTGGCAGGAGGTTCAATCATTCAAGAATTTGATGCACATGGTCGTCTTTTGTCCACTGAGAAGGGTATGCCCGTACAAGATCCTGAGTGTGTTACAAAATGCAGAGTCTCAGTGCCTACTGTACCTTGTAGTGAAGGAGAGAATTCAGCAATTAAGTTCGAAGATAATGATATTTATTTGGCTGATAACCAGCTTGTGTGCTCACAGGGTGTAATTATCCCAAATTCTGGCGAGGGAGAATTGAAGAAAGCCAAAGTTTCTTTTGATTGTAATCAAGATTCAAAATCAATGTCCTTGGATGATGGATCATGCCGGATGGTCAAGGCTCAGGGTTTTCCTGAGCAAGCATGTCTTGGTTCAGTTGCTACAAAAGATGGAAGCGCATGGGGTCTGAACAAGGATGGTCAGGGAGCGAAAAATTCTTGTCCTGATATTGTCACTTGGAGTTCAAGCTCTCTGGTTGCCGATGAGAGGGAAAATATTATGGATGGGGACAATGGGATTGTTGAACACAGCCAACCAACTTCTTCAAACGTGACAGACTCATCCAATGGCTCGGGTTCAATGATCCATGGCAATTCTTCTGGTGCTCAAAGCTTTGAGGATCAGAAGCATTCCAAAGTCAAATCAACTCTTGTTGACAGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGATGATACAATACGTTTCAAGTTTGACCCATATGCAGGTTGTTTCCAATTATACGAAGAAGTAGCAATAAGATTCAAATTACAAAATGGATCATTTCAGCTGAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGATAAATGACTCAGATTTGCAAGAGTGCGTGGAAATATGGGAAGATATGGACACACGTACTGTGAAGTTTCTTGTTCATGATATGCCTTACTTCGTAGGCAACTCTGGTAGTAGCAGTTGCTTCCTGGGAGGCTCCTAG 2997 0.4151 MEYPSSHKGKDSEYWNSPRAQLEGPASLDGSTKNSISQDMLSTFSELINFDTYAGWCNDSSTTDQVLANGLSSYASVPYASLDGFNLVEEGSGSFLASDVNKNHNVIRSFPNSGEKVAFQQMEAQLELSDDGNDAGNLNYKHHVNESFEELNNLAMGNYIVSRPPGWSLDERMLRALSLFKESVGGGILAQVWVPRKHGNQFILTTSEQPYLLDQMLAGYREVSRTFTFSAEVRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHEVRGSIALPVFDLYSEMPCCAVLELVTTKEKTDFDRELEIVCQTLQVVNLRTIVTPRLPPQSLSNNKRAGLMEIIDVLRAVCHAHCLPLALTWIPCCYLKGIGNETMRVLSKEGHSSSSDKCLLCIEESACYVNDRMMEGFVHACVEHHLEEGQGTAGRAIQSNQPFFYPDVKAYDVGEYPLVQHARKYNLSAAVSIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICKSLRTVTDAELSGISGSLVNLQNEKVRDFLPISRKNSQIELMDGDKDSVSKISLKACNLRNNGIEAAYNQEMNGSKRQVEKKRSTGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGIKFDPSTGGFVAGGSIIQEFDAHGRLLSTEKGMPVQDPECVTKCRVSVPTVPCSEGENSAIKFEDNDIYLADNQLVCSQGVIIPNSGEGELKKAKVSFDCNQDSKSMSLDDGSCRMVKAQGFPEQACLGSVATKDGSAWGLNKDGQGAKNSCPDIVTWSSSSLVADERENIMDGDNGIVEHSQPTSSNVTDSSNGSGSMIHGNSSGAQSFEDQKHSKVKSTLVDSGSKIIVKATYKDDTIRFKFDPYAGCFQLYEEVAIRFKLQNGSFQLKYLDDEEEWVMLINDSDLQECVEIWEDMDTRTVKFLVHDMPYFVGNSGSSSCFLGGS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0031 998 MobiDBLite consensus disorder prediction 850 882 - -
Lele32g0031 998 Pfam RWP-RK domain 603 651 IPR003035 -
Lele32g0031 998 SMART PB1_new 899 981 IPR000270 GO:0005515
Lele32g0031 998 ProSiteProfiles PB1 domain profile. 899 981 IPR000270 GO:0005515
Lele32g0031 998 MobiDBLite consensus disorder prediction 848 882 - -
Lele32g0031 998 MobiDBLite consensus disorder prediction 1 34 - -
Lele32g0031 998 Gene3D - 896 980 - -
Lele32g0031 998 PANTHER PROTEIN NLP8 113 992 IPR045012 GO:0003700
Lele32g0031 998 SUPERFAMILY CAD & PB1 domains 894 982 - -
Lele32g0031 998 Pfam PB1 domain 902 980 IPR000270 GO:0005515
Lele32g0031 998 CDD PB1_NLP 900 980 IPR034891 -
Lele32g0031 998 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0031 Lele-ChrLele32 211955 216625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0031 1 996 NLP Transcription Factor Family AT2G43500 47.012 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele32g0031 PB1 2.4e-14 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0031 29 208497 213237 Lele32g0031 32 211955 216625 hybridization
Lele30g1360 30 15793435 15798100 Lele32g0031 32 211955 216625 hybridization