Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0025 ATGGGCCGGACTAGCCTCTTTTGTGCTCGGAAATCCAACTCGGTTCTGCTTCCGGTAGCACTCTGTCCTACGCTCCCCAAGTCATTTCTGATGACAAAGTTCAATGTCTGGCTATGCATTGCTCAAGCTTCGATCTTCAAACCAAGTCCACGAGGGCAAGAGAATGCGAAGCTATGTTTAACAACATTACGCGGGGTTGCTTTCAGAGGCCCAACCCTCTTCATGATTTCATTTCCTGCCAAAGGAGCTGGTTTACCCCCAGAAGAAAAGCCAAGGCTCTGTGATGATACCTGTGGGAAAGAGCTTGAAAATTTATGTCAGCCTGTGGCTGTTAACGATGTTGCGATGGTTCCATCTGGACAAATATTTGATAGTTCATTGGAGAAAGGTCAGCCCTACATTTTTCGCGTTGGCTCTGGTCAGGTGATAAAGGGACTTGATGAAGGAATTTTGGGCATGAAAATAGCAGGAAAACGCCGGTTGTACATACCTGGATCAGTCTTACATCTGCTCCAGGAAGACCAAGGGTGGCTCCCAACAGTCCAGTCATATTTGATGTTAGTCTGGAATACATCCCAGGGCTTGAACTGGATGAGGAATGAATCAACCGATTTCTCCCCCATATATAATATCATGATGATGGCTTCTCTGATGAATTACCAGCCCACTGTGTTCAATGTTCGAAGCGTTGTCAATGGGAAGCCCTTGGTTGCGTCAAAGGATAGGGGCGTCATTGTATGCGGCCTCCGGAGGAGCCCCAGAAAAGGTCTATGGGGGTCGAGGGTTTTGTCCAAAGAAGCCATTCAAGTGGTTCACTCCCTCAAGCTCGCGAAAACTACCCCCAAAATCCAACATCTTCTCCATTCCAGACTCTCCAGGCTCCTCAAAGTCGACGTCTTGGACGTCCTCTCTGAGCTGCACAGACAAAATGAATTGGATTTGTGCCTCCAGGTTTTCGACTTCATTGGCAAGGAAGCAGGATATGAAACGGAGTTGTCGCTGTACTCCGACATGATATTGCTGCTGGGAAGAAATAAGCAGATTGGGAGGGCGGAAGAGCTGTTTTCTGATGTAATGGAAAAGGGATTAAAACCTGACACAAGGATATACACGGAGATGATCGGATCTTATATACAAGTAGGCATGACTGAAAAGGCAATGGAGACGTACGGAGTAATGAAGGCTTCGGGGTGTGCCCCGGATAAGTTGACTTTCACGATTCTGATAAGAAACCTTGAGAAGGCTGGCCTTCCACACCTGGCTGCAACTTTGAAGGATGAGTGCTTTGACTACGTGGACTCTCCTGACAAATTCATTCGTGAACTCCAGCACAAGCATGCCAAAGGGAGATCGATTGTATGA 1362 0.4736 MGRTSLFCARKSNSVLLPVALCPTLPKSFLMTKFNVWLCIAQASIFKPSPRGQENAKLCLTTLRGVAFRGPTLFMISFPAKGAGLPPEEKPRLCDDTCGKELENLCQPVAVNDVAMVPSGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGILGMKIAGKRRLYIPGSVLHLLQEDQGWLPTVQSYLMLVWNTSQGLNWMRNESTDFSPIYNIMMMASLMNYQPTVFNVRSVVNGKPLVASKDRGVIVCGLRRSPRKGLWGSRVLSKEAIQVVHSLKLAKTTPKIQHLLHSRLSRLLKVDVLDVLSELHRQNELDLCLQVFDFIGKEAGYETELSLYSDMILLLGRNKQIGRAEELFSDVMEKGLKPDTRIYTEMIGSYIQVGMTEKAMETYGVMKASGCAPDKLTFTILIRNLEKAGLPHLAATLKDECFDYVDSPDKFIRELQHKHAKGRSIV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0025 453 Pfam PPR repeat 335 363 IPR002885 -
Lele32g0025 453 SUPERFAMILY FKBP-like 108 166 - -
Lele32g0025 453 Gene3D Tetratricopeptide repeat domain 262 431 IPR011990 GO:0005515
Lele32g0025 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Lele32g0025 453 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Lele32g0025 453 Pfam PPR repeat family 365 412 IPR002885 -
Lele32g0025 453 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 106 164 IPR001179 GO:0003755
Lele32g0025 453 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 239 446 IPR044190 GO:0000373|GO:0003723|GO:0009658
Lele32g0025 453 Gene3D - 97 185 IPR046357 GO:0003755
Lele32g0025 453 TIGRFAM PPR: pentatricopeptide repeat domain 335 367 IPR002885 -
Lele32g0025 453 TIGRFAM PPR: pentatricopeptide repeat domain 369 401 IPR002885 -
Lele32g0025 453 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 117 165 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0025 Lele-ChrLele32 175670 181237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0025 326 452 Glycosyltransferase AT1G05670 24.219 4.22e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0025 29 167795 170927 Lele32g0025 32 175670 181237 hybridization
Lele30g1369 30 15843826 15847853 Lele32g0025 32 175670 181237 hybridization