Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1511 ATGGAATACCCTTCTTCTCATAAGGGAAAAGACAGTGGATACTGGAATTCACCTCGAGCCCAGTTGGAGGGACGAGCATCTTTAGATGGTAGCACAAAAAATTCAATTCCAGAGGATATGCTTAGCACCTTCTCTGACCTCATAAATTTTGATACTTATGCTGGTTGGTGCAATGGCTCATCAACCACAGATCAGGTTTTAGCTAATGGGCTTTCATCATATGCCTCGGTACCGTATGCATCACTTGATGGACTCAATTTAGTGGAGGAGAGCAGTGGGTCATTCTTGGCAAGTGATGTTAATAAGAATTACAACGTGATAAGAAGTTTCCCCAACTCTGGAGAGAAAGTTGCATTTCAGCAAATGGAGGCCCAACTTGAGTTCTCTGATGATGGAAATGATGCTGGGAACTTAAATTATAAACATCGTCTTAATGAATCTTTTGAAGAGCTTAGTAACTTAGCAATGGGCAATTATATAGTTTCTAGGCCACCTGGCTGGTCACTAGATGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCTGCTGGTGGGGGAATCTTGGCACAAGTTTGGGTACCAATAAAGCATGGAAATCAATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGACCAAATGCTTGCAGGTTATCGTGAGGTGTCGAGGACATTTACATTCTCAGCAGAAGGAAGGCCGGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATATCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTATACTAAGGCTGAATATTTGAGGATTGAGCATGCGATTAATCATGAGGTTCGTGGATCAATTGCAGTTCCAGTGTTTGATCTTTACTCTGAAATGCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGACTGATTTTGATAGAGAACTGGAAATTGTTTGTCAAGCACTCCAGGTTGTGAATTTAAGGACTACTGTGATGCCCCGACTTCCTCCCCAGAGTCTCTCAAAGAACAAAAGAGCAGCTTTAATGGAGATAATTGACGTGTTACGGGCTGTGTGTCACGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAACTGGCAATGAAACTATGAGAGTACTAAGTAAGGAGGGTCATTCAAGTTCTAGTGATAAATGTGTGTTATGCATGGAAGAATCAGCTTGCTATGTTAATGATAGAATGATAGAAGGATTTGTTCATGCATGTGTTGAGCATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAAAGCTATCCAGTCAAATCAGCCTTTCTTCTATCCTGATGTCAAGGCATATGATGTTTGTGAATATCCTCTTGTTCAACATGCACGCAAATACAATTTGAATGCTGCGGTTTCTATCAGGCTAAGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGAAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACAGTTACTGATGCTGAATTATCAGGAATATCAGGGTCACTGGTAAATCTTCAAAATGAAAAAGTACGAGAGTTTTTGCCTATATCTAGGAGAAACTCTCAAATAGAATTGATGGATGGTGACAAGGACTCAGGCAGTAAGATTTCATTGAAGGCTTGCAACTTAAGGAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGGGTCAAAAAGGCAGGTTGAGAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGTAGTCTAAAGGATGCTGCTAAGAGCATTGGCGTTTGTCCTACAACTCTGAAACGGATATGCAGGCAACATGGCATTTCGAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGCTAAAGTTTGACCCATCTACTGGGGGATTTGTGGCAGGAGGATCAATCATTCAAGAATTTGATGCACGTGGTCGTCTTTTGTTCTCTGAGAAGAGTATGCCCGTACAAGATCCTGAGTGTGTTACAAAATGTACAGTATCAGTGCCTACTGTACCTTGTAGTGAAGGAGAGAATTTGGCAATTAAGTTGGAAGATAATGATGTTTATTTGGCTGATGACCAGCTTGTGTGCTCACTAGGCGTAATTATCCCAAATTCTGGCGAGGGAGAATTGAAGAAAGCCAAAGCTTCTTTTGTTGATTGTAGTCCGGATTCAAAATCTATGTCCTTGGATGATGGATCATGCCGGATGGTCAAGGCTCCGGGTTGTCCTGAGCAAGCATGTCTTGGTTCAGTTGCTACAAAAGATGGAAGCGCATGGGGTCTGAACAAGGATGGTCAGGGAGCGAAAAATTCTTATCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTAGTTGCTGATGAGATGGAAAATATTATGGATGGGGACAATGGGATTGTTGAACACAGCCAACCTACTTCTTCAAACGTGACAGACTCATCCAATGGTTCAGGTTCAATGATCCATGGCAGTTCGTCTGGTGCTCAAAGCTTTGAGGATCAGAAGCATTCCAAAGTCAAATCAACGCTTGTTAACAGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGATGATACTATACGTTTCAAGTTTGACCCATCTGCAGGTTGTTTCCAACTATACGAAGAAGCAGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTAAATGACTCAGATTTGCAAGAGTGCGTAGAAGTATGGGAAGCTATGGGCACACGTAGCGTGAAGTTTCTTGTTCGGGATATGCCTTGCTTCGTAGGCAGCTCCAGTAGTAGCAGTTGCTTCCTGGGAGGCTCCTAG 3000 0.4207 MEYPSSHKGKDSGYWNSPRAQLEGRASLDGSTKNSIPEDMLSTFSDLINFDTYAGWCNGSSTTDQVLANGLSSYASVPYASLDGLNLVEESSGSFLASDVNKNYNVIRSFPNSGEKVAFQQMEAQLEFSDDGNDAGNLNYKHRLNESFEELSNLAMGNYIVSRPPGWSLDERMLRALSLFKESAGGGILAQVWVPIKHGNQFILTTSEQPYLLDQMLAGYREVSRTFTFSAEGRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHEVRGSIAVPVFDLYSEMPCCAVLELVTTKEKTDFDRELEIVCQALQVVNLRTTVMPRLPPQSLSKNKRAALMEIIDVLRAVCHAHSLPLALTWIPCCYLKGTGNETMRVLSKEGHSSSSDKCVLCMEESACYVNDRMIEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKAYDVCEYPLVQHARKYNLNAAVSIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICKSLRTVTDAELSGISGSLVNLQNEKVREFLPISRRNSQIELMDGDKDSGSKISLKACNLRNNGIEAAYNQEMNGSKRQVEKKRSTGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGGFVAGGSIIQEFDARGRLLFSEKSMPVQDPECVTKCTVSVPTVPCSEGENLAIKLEDNDVYLADDQLVCSLGVIIPNSGEGELKKAKASFVDCSPDSKSMSLDDGSCRMVKAPGCPEQACLGSVATKDGSAWGLNKDGQGAKNSYPDIVSWSSSSLVADEMENIMDGDNGIVEHSQPTSSNVTDSSNGSGSMIHGSSSGAQSFEDQKHSKVKSTLVNSGSKIIVKATYKDDTIRFKFDPSAGCFQLYEEAATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEVWEAMGTRSVKFLVRDMPCFVGSSSSSSCFLGGS 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1511 999 PANTHER PROTEIN NLP8 113 993 IPR045012 GO:0003700
Lele31g1511 999 Pfam RWP-RK domain 603 651 IPR003035 -
Lele31g1511 999 CDD PB1_NLP 901 981 IPR034891 -
Lele31g1511 999 SMART PB1_new 900 982 IPR000270 GO:0005515
Lele31g1511 999 MobiDBLite consensus disorder prediction 851 883 - -
Lele31g1511 999 ProSiteProfiles PB1 domain profile. 900 982 IPR000270 GO:0005515
Lele31g1511 999 SUPERFAMILY CAD & PB1 domains 894 984 - -
Lele31g1511 999 Gene3D - 896 981 - -
Lele31g1511 999 MobiDBLite consensus disorder prediction 846 883 - -
Lele31g1511 999 Pfam PB1 domain 903 981 IPR000270 GO:0005515
Lele31g1511 999 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1511 Lele-ChrLele31 20345520 20350275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1511 1 997 NLP Transcription Factor Family AT2G43500 47.332 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele31g1511 PB1 3.8e-15 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0031 29 208497 213237 Lele31g1511 31 20345520 20350275 hybridization
Lele30g1360 30 15793435 15798100 Lele31g1511 31 20345520 20350275 hybridization