Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1500 ATGAAAATCCAGTGCGATGTGTGTGAGAAAGCTCCCGCAACGGTGATTTGTTGCGCCGACGAGGCTGCTTTATGTGCTAAATGCGACATTGAAGTTCATGCTGCCAACAAGCTAGCCAGCAAGCACCAGAGGCTTCTCCTTCAGTGCCTCTCTACCAAGCTTCCCACATGCGACATCTGCCAAGACAAGCCAGCTTTTATATTTTGCGTTGAAGACAGAGCGCTGTTCTGTGAAGCTTGTGATGAACCAATTCATTCAGCTGGCAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCAACCGGTATTCGGGTGGCTTTGAATTCTGACTGCTCCAAGGACAATGAAGAACGTCGCTTGGAGCCACCTAATCGGAGTGCTCAACAAGCTTCTGCAAAAGCCCCCCCTCAGCCTCAGCAAGTCCCTACCTTCACGTCCTCTTGGGCTGTGGATGACTTGTTGGAATTCACTGACTTCGAATCGCCTGACAAGAAAGAATCACTGGAGTTTGGAGAGCTGGAATGGTTATCGGATGTGGGTCTTTTCGGAGAACAATTTCCTGGGGAGGCATTGGCTGCAGCTGAAGTCCCACAGCTTCCAGTAACACCATCCAGCAACGTTGCCTCATACAGACCCTCTAAGTCCTTCATGTCTCTCAAGAAACCTCGGATTGAATTTGAAGACGATGATGAGATCTTCACAGTGCCTGATCTTGGTTGA 717 0.4979 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSTKLPTCDICQDKPAFIFCVEDRALFCEACDEPIHSAGSLSANHQRFLATGIRVALNSDCSKDNEERRLEPPNRSAQQASAKAPPQPQQVPTFTSSWAVDDLLEFTDFESPDKKESLEFGELEWLSDVGLFGEQFPGEALAAAEVPQLPVTPSSNVASYRPSKSFMSLKKPRIEFEDDDEIFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1500 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele31g1500 238 Gene3D Classic Zinc Finger 1 94 - -
Lele31g1500 238 CDD Bbox1_BBX-like 57 98 - -
Lele31g1500 238 CDD Bbox1_BBX-like 5 47 - -
Lele31g1500 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele31g1500 238 MobiDBLite consensus disorder prediction 113 141 - -
Lele31g1500 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lele31g1500 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Lele31g1500 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele31g1500 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele31g1500 238 MobiDBLite consensus disorder prediction 123 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1500 Lele-ChrLele31 20267994 20269482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1500 1 163 Orphan Transcription Factor Family AT1G06040 65.294 5.46e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele31g1500 zf-B_box 6.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0477 11 4587647 4589161 Lele31g1500 31 20267994 20269482 CCT
Lele29g0045 29 280518 282028 Lele31g1500 31 20267994 20269482 hybridization
Lele30g1346 30 15711898 15713410 Lele31g1500 31 20267994 20269482 hybridization