Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1483 ATGGACTCCGATGGTGATATGCATGATGCCAACGATGTCGAGTCCCTAGATGATGATTTCTACAGCGGCGAGACAGAGGATGTTCCTTTGGATTACTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGGGATGAATCTGACAAGATCGAGTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATATCACAAGGGTAGCGACCGTTCTTTTTATCTCACGAGTTGATGCATCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGAAAAGCCAGTTGTCCAGTTTCCTTATGCTAGGGAGCTTACCTGTGGCATTTGTTTTGAAACTTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGATATATTGGTATGGCTATTAATGATGGTCCAGGATGTTTGATGCTGCGGTGTCCTGATCCCTCTTGTGGTGCAGCTGTTGGTCAAAATATGATTGATGAATTAGCTTCTCATGAGGATAAGCAAAAGTATTCTCGTTACCTTCGTAGGTCCTATGTCGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCGTATTTCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTGCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCGAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTGTGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACGGGTGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAGCAAGAGGGAGTGTATGATGACACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAAAGATACACACATTATTATGAGCGGTGGGCTAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTTCATCAGATGCAAACAGTCCATCTTGAGAAGCTTAGCGACATACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCCTATGGGTACTATTTACCAGAGCATGAGCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCGTCAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAACCAAACTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTGTCTGATGTGGATAGTAATGGGGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCCCCCGGAAGCAGAAAGGGGAAAGGGGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATATTAATTGGTATTGTGAACACTGTACCTATGCAAATACTATGTCTGTTAACACATGCCAAATGTGCGCTATACAGCGTCGATAA 1773 0.4416 MDSDGDMHDANDVESLDDDFYSGETEDVPLDYYSDYDDDADDYFDDGDESDKIESRRPEQNFTILKESDIQQRQEDDITRVATVLFISRVDASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVVQFPYARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGMAINDGPGCLMLRCPDPSCGAAVGQNMIDELASHEDKQKYSRYLRRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYFFCWNCTEEAHRAVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELRQYLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAPGSRKGKGGRGKGTTRTSSSNKMTDDINWYCEHCTYANTMSVNTCQMCAIQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1483 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Lele31g1483 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Lele31g1483 590 SMART ibrneu5 208 270 IPR002867 -
Lele31g1483 590 SMART ibrneu5 274 344 IPR002867 -
Lele31g1483 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Lele31g1483 590 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 -
Lele31g1483 590 SUPERFAMILY RING/U-box 289 337 - -
Lele31g1483 590 MobiDBLite consensus disorder prediction 11 48 - -
Lele31g1483 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Lele31g1483 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Lele31g1483 590 SUPERFAMILY RING/U-box 136 217 - -
Lele31g1483 590 MobiDBLite consensus disorder prediction 522 558 - -
Lele31g1483 590 MobiDBLite consensus disorder prediction 522 539 - -
Lele31g1483 590 Pfam Ariadne domain 357 518 IPR045840 -
Lele31g1483 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Lele31g1483 590 MobiDBLite consensus disorder prediction 1 53 - -
Lele31g1483 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 222 IPR013083 -
Lele31g1483 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Lele31g1483 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Lele31g1483 590 Gene3D - 268 521 - -
Lele31g1483 590 SUPERFAMILY RING/U-box 209 277 - -
Lele31g1483 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1483 Lele-ChrLele31 20187218 20192872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1483 17 585 ARIADNE family AT1G65430 70.855 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0064 29 363472 369240 Lele31g1483 31 20187218 20192872 hybridization
Lele30g1329 30 15615069 15619692 Lele31g1483 31 20187218 20192872 hybridization