Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele31g1482 | ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACAGAGGATGTTCCCATGGATTACTACAGCGACTGCGATGATGGTGCTGATGATTACTTTGATGATGGCGATGAATCTGACAAGACTTCGTCTCGTCCTGAGCAAAATTTTACCATCTTGAGGGAATCAGATATTCGGCAAAGACAAGAGGATGACATAGCAAGAGTAGCGACTGTTCTTTTTATCTCTCCAGAGGCTGCAAGCATCTTACTTCGTCACTATAATTGGAATGTCAGTGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGGACAGTTGGCTTACTGGAGAAGCCAGTTGTCCAGTTTGCTAACGCAAGGGAGCTTAATTGTGGCATCTGTTTTGAAACTTATCCCTGTTCACGGATTAAATCTGCTGGTTGTGGTCATCCCTTCTGCATCTCATGCTGGGAAGGGTATATTGGCACGGCTATTAGTGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCTTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCGATTGGCATCTGTTGAGGATGAGCAGAAGTATTCTCGCTACCTTCTTAGGTCCTATATTGAAGACAACAAGAAGACGAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCGGTTACATTTGATGCTGGTAGTGGAAACTATGATGTTTCCTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGGTTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATTCTGGCCAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCGATTGAGAAAAACCAAGGGTGTATGCATATGACATGTACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAAAACTGGGGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAAGCTGAAAGACGAAGAGAGATGGCAAAGAACTCATTGGAGAGATACACGCATTATTATGAGCGGTGGGCTAGCAATCAATCATCGAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTCAATCTTGAGAAGCTTAGCGACATACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCATATGGATACTACTTACCCGAGCATGAGCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTTGCTGGACTAACCAGCGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGATGTAGGTAGTAATGGGGCTACTTCGAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAAGTACACGAAGCAGCAATTCCAATAAAATGACGGATGATAATGTGTTGTGA | 1698 | 0.4488 | MDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDCDDGADDYFDDGDESDKTSSRPEQNFTILRESDIRQRQEDDIARVATVLFISPEAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLEKPVVQFANARELNCGICFETYPCSRIKSAGCGHPFCISCWEGYIGTAISDGPGCLMLRCPDPSCGAAVGQDMIDRLASVEDEQKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGEKTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVNLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVGSNGATSSKATSSKNAAGSSKGRGGRGKGSTRSSNSNKMTDDNVL | 565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele31g1482 | 565 | ProSiteProfiles | Zinc finger RING-type profile. | 138 | 182 | IPR001841 | - | |
| Lele31g1482 | 565 | FunFam | RBR-type E3 ubiquitin transferase | 270 | 520 | - | - | |
| Lele31g1482 | 565 | SUPERFAMILY | RING/U-box | 134 | 219 | - | - | |
| Lele31g1482 | 565 | Coils | Coil | 348 | 375 | - | - | |
| Lele31g1482 | 565 | MobiDBLite | consensus disorder prediction | 546 | 565 | - | - | |
| Lele31g1482 | 565 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 68 | 435 | IPR031127 | GO:0004842|GO:0016567 | |
| Lele31g1482 | 565 | SUPERFAMILY | RING/U-box | 288 | 336 | - | - | |
| Lele31g1482 | 565 | FunFam | RBR-type E3 ubiquitin transferase | 132 | 221 | - | - | |
| Lele31g1482 | 565 | Pfam | IBR domain, a half RING-finger domain | 207 | 269 | IPR002867 | - | |
| Lele31g1482 | 565 | Pfam | IBR domain, a half RING-finger domain | 286 | 334 | IPR002867 | - | |
| Lele31g1482 | 565 | SUPERFAMILY | RING/U-box | 208 | 276 | - | - | |
| Lele31g1482 | 565 | SMART | ibrneu5 | 273 | 343 | IPR002867 | - | |
| Lele31g1482 | 565 | SMART | ibrneu5 | 207 | 269 | IPR002867 | - | |
| Lele31g1482 | 565 | MobiDBLite | consensus disorder prediction | 520 | 565 | - | - | |
| Lele31g1482 | 565 | CDD | RING-HC_RBR_TRIAD1_like | 138 | 188 | - | - | |
| Lele31g1482 | 565 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Lele31g1482 | 565 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 220 | IPR013083 | - | |
| Lele31g1482 | 565 | Gene3D | - | 265 | 520 | - | - | |
| Lele31g1482 | 565 | MobiDBLite | consensus disorder prediction | 520 | 539 | - | - | |
| Lele31g1482 | 565 | Pfam | Ariadne domain | 356 | 517 | IPR045840 | - | |
| Lele31g1482 | 565 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Lele31g1482 | 565 | ProSiteProfiles | TRIAD supradomain profile. | 134 | 347 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele31g1482 | Lele-ChrLele31 | 20179609 | 20185356 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele31g1482 | 17 | 542 | ARIADNE family | AT1G65430 | 73.446 | 0.0 | 810 |